Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2590

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2589 and Psest_2590 are separated by 95 nucleotidesPsest_2590 and Psest_2591 are separated by 11 nucleotides Psest_2589: Psest_2589 - 3-isopropylmalate dehydrogenase, at 2,771,214 to 2,772,296 _2589 Psest_2590: Psest_2590 - 3-isopropylmalate dehydratase, small subunit, at 2,772,392 to 2,773,039 _2590 Psest_2591: Psest_2591 - 3-isopropylmalate dehydratase, large subunit, at 2,773,051 to 2,774,478 _2591 Position (kb) 2772 2773 2774Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2771.467 kb on + strand, within Psest_2589at 2771.468 kb on - strand, within Psest_2589at 2771.468 kb on - strand, within Psest_2589at 2771.632 kb on + strand, within Psest_2589at 2771.632 kb on + strand, within Psest_2589at 2771.632 kb on + strand, within Psest_2589at 2771.632 kb on + strand, within Psest_2589at 2771.632 kb on + strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.633 kb on - strand, within Psest_2589at 2771.663 kb on - strand, within Psest_2589at 2771.663 kb on - strand, within Psest_2589at 2771.663 kb on - strand, within Psest_2589at 2771.663 kb on - strand, within Psest_2589at 2771.663 kb on - strand, within Psest_2589at 2771.822 kb on - strand, within Psest_2589at 2771.875 kb on + strand, within Psest_2589at 2771.876 kb on - strand, within Psest_2589at 2771.876 kb on - strand, within Psest_2589at 2772.146 kb on - strand, within Psest_2589at 2772.390 kb on + strandat 2772.391 kb on - strandat 2772.691 kb on - strand, within Psest_2590at 2773.072 kb on + strandat 2773.072 kb on + strandat 2773.072 kb on + strandat 2773.073 kb on - strandat 2773.073 kb on - strandat 2773.430 kb on - strand, within Psest_2591at 2773.430 kb on - strand, within Psest_2591at 2773.430 kb on - strand, within Psest_2591at 2773.487 kb on + strand, within Psest_2591at 2773.488 kb on - strand, within Psest_2591at 2773.488 kb on - strand, within Psest_2591

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,771,467 + Psest_2589 0.23 -3.1
2,771,468 - Psest_2589 0.23 -2.8
2,771,468 - Psest_2589 0.23 -3.2
2,771,632 + Psest_2589 0.39 -1.2
2,771,632 + Psest_2589 0.39 -2.1
2,771,632 + Psest_2589 0.39 -0.1
2,771,632 + Psest_2589 0.39 -3.2
2,771,632 + Psest_2589 0.39 -2.8
2,771,633 - Psest_2589 0.39 -4.9
2,771,633 - Psest_2589 0.39 -2.6
2,771,633 - Psest_2589 0.39 -1.1
2,771,633 - Psest_2589 0.39 -5.4
2,771,633 - Psest_2589 0.39 -4.0
2,771,633 - Psest_2589 0.39 -1.5
2,771,633 - Psest_2589 0.39 -1.8
2,771,633 - Psest_2589 0.39 -4.5
2,771,633 - Psest_2589 0.39 -2.5
2,771,633 - Psest_2589 0.39 -4.1
2,771,633 - Psest_2589 0.39 -3.0
2,771,633 - Psest_2589 0.39 -2.7
2,771,633 - Psest_2589 0.39 -2.9
2,771,633 - Psest_2589 0.39 -2.2
2,771,633 - Psest_2589 0.39 -4.2
2,771,633 - Psest_2589 0.39 -5.0
2,771,633 - Psest_2589 0.39 -3.4
2,771,633 - Psest_2589 0.39 -1.5
2,771,633 - Psest_2589 0.39 -2.0
2,771,633 - Psest_2589 0.39 -3.1
2,771,633 - Psest_2589 0.39 -2.2
2,771,633 - Psest_2589 0.39 -5.3
2,771,633 - Psest_2589 0.39 -3.3
2,771,633 - Psest_2589 0.39 -3.2
2,771,633 - Psest_2589 0.39 -3.9
2,771,633 - Psest_2589 0.39 -4.4
2,771,633 - Psest_2589 0.39 -2.5
2,771,633 - Psest_2589 0.39 -3.4
2,771,633 - Psest_2589 0.39 -1.7
2,771,633 - Psest_2589 0.39 -0.7
2,771,663 - Psest_2589 0.41 -2.1
2,771,663 - Psest_2589 0.41 -1.2
2,771,663 - Psest_2589 0.41 -1.8
2,771,663 - Psest_2589 0.41 -3.7
2,771,663 - Psest_2589 0.41 -3.5
2,771,822 - Psest_2589 0.56 -2.6
2,771,875 + Psest_2589 0.61 -5.8
2,771,876 - Psest_2589 0.61 -0.3
2,771,876 - Psest_2589 0.61 -2.7
2,772,146 - Psest_2589 0.86 -1.4
2,772,390 + -4.0
2,772,391 - -0.1
2,772,691 - Psest_2590 0.46 -4.8
2,773,072 + -1.5
2,773,072 + -3.1
2,773,072 + -3.8
2,773,073 - -1.9
2,773,073 - +0.2
2,773,430 - Psest_2591 0.27 -2.9
2,773,430 - Psest_2591 0.27 -1.8
2,773,430 - Psest_2591 0.27 -3.0
2,773,487 + Psest_2591 0.31 -4.8
2,773,488 - Psest_2591 0.31 -2.1
2,773,488 - Psest_2591 0.31 -3.8

Or see this region's nucleotide sequence