Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1772 and Psest_1773 are separated by 190 nucleotides Psest_1773 and Psest_1774 are separated by 28 nucleotides Psest_1774 and Psest_1775 are separated by 85 nucleotides
Psest_1772: Psest_1772 - Aspartate/tyrosine/aromatic aminotransferase, at 1,872,940 to 1,874,151
_1772
Psest_1773: Psest_1773 - methionine-R-sulfoxide reductase, at 1,874,342 to 1,874,740
_1773
Psest_1774: Psest_1774 - Glutathione peroxidase, at 1,874,769 to 1,875,251
_1774
Psest_1775: Psest_1775 - Predicted ATPase (AAA+ superfamily), at 1,875,337 to 1,876,227
_1775
Position (kb)
1874
1875
1876 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1873.859 kb on + strand, within Psest_1772 at 1873.859 kb on + strand, within Psest_1772 at 1873.859 kb on + strand, within Psest_1772 at 1873.860 kb on - strand, within Psest_1772 at 1873.860 kb on - strand, within Psest_1772 at 1873.860 kb on - strand, within Psest_1772 at 1873.860 kb on - strand, within Psest_1772 at 1873.860 kb on - strand, within Psest_1772 at 1873.860 kb on - strand, within Psest_1772 at 1873.904 kb on + strand, within Psest_1772 at 1873.904 kb on + strand, within Psest_1772 at 1874.111 kb on + strand at 1874.279 kb on + strand at 1874.279 kb on + strand at 1874.279 kb on + strand at 1874.279 kb on + strand at 1874.280 kb on - strand at 1874.280 kb on - strand at 1874.307 kb on - strand at 1874.337 kb on + strand at 1874.338 kb on - strand at 1874.338 kb on - strand at 1874.338 kb on - strand at 1874.447 kb on + strand, within Psest_1773 at 1874.447 kb on + strand, within Psest_1773 at 1874.447 kb on + strand, within Psest_1773 at 1874.448 kb on - strand, within Psest_1773 at 1874.448 kb on - strand, within Psest_1773 at 1874.448 kb on - strand, within Psest_1773 at 1874.549 kb on + strand, within Psest_1773 at 1874.550 kb on - strand, within Psest_1773 at 1874.550 kb on - strand, within Psest_1773 at 1874.895 kb on + strand, within Psest_1774 at 1874.896 kb on - strand, within Psest_1774 at 1875.195 kb on + strand, within Psest_1774 at 1875.289 kb on + strand at 1875.331 kb on + strand at 1875.664 kb on + strand, within Psest_1775 at 1875.665 kb on - strand, within Psest_1775 at 1875.665 kb on - strand, within Psest_1775 at 1875.740 kb on + strand, within Psest_1775 at 1875.740 kb on + strand, within Psest_1775 at 1875.740 kb on + strand, within Psest_1775 at 1875.741 kb on - strand, within Psest_1775 at 1875.741 kb on - strand, within Psest_1775 at 1875.872 kb on - strand, within Psest_1775 at 1876.039 kb on + strand, within Psest_1775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,873,859 + Psest_1772 0.76 -2.1 1,873,859 + Psest_1772 0.76 -2.3 1,873,859 + Psest_1772 0.76 -0.9 1,873,860 - Psest_1772 0.76 -4.4 1,873,860 - Psest_1772 0.76 -1.8 1,873,860 - Psest_1772 0.76 -0.9 1,873,860 - Psest_1772 0.76 -3.8 1,873,860 - Psest_1772 0.76 -2.6 1,873,860 - Psest_1772 0.76 -0.4 1,873,904 + Psest_1772 0.80 -2.5 1,873,904 + Psest_1772 0.80 -1.9 1,874,111 + -2.3 1,874,279 + -2.2 1,874,279 + -3.7 1,874,279 + -2.3 1,874,279 + -4.0 1,874,280 - -0.1 1,874,280 - -0.3 1,874,307 - -2.0 1,874,337 + +0.4 1,874,338 - +0.5 1,874,338 - -0.7 1,874,338 - +0.2 1,874,447 + Psest_1773 0.26 -0.5 1,874,447 + Psest_1773 0.26 +0.3 1,874,447 + Psest_1773 0.26 -0.1 1,874,448 - Psest_1773 0.27 +2.5 1,874,448 - Psest_1773 0.27 -0.1 1,874,448 - Psest_1773 0.27 -1.2 1,874,549 + Psest_1773 0.52 +0.5 1,874,550 - Psest_1773 0.52 +0.1 1,874,550 - Psest_1773 0.52 +0.5 1,874,895 + Psest_1774 0.26 -0.6 1,874,896 - Psest_1774 0.26 -0.3 1,875,195 + Psest_1774 0.88 -1.5 1,875,289 + -0.7 1,875,331 + -0.9 1,875,664 + Psest_1775 0.37 +0.4 1,875,665 - Psest_1775 0.37 +0.5 1,875,665 - Psest_1775 0.37 -1.2 1,875,740 + Psest_1775 0.45 -0.0 1,875,740 + Psest_1775 0.45 +0.2 1,875,740 + Psest_1775 0.45 +0.5 1,875,741 - Psest_1775 0.45 +1.0 1,875,741 - Psest_1775 0.45 +0.6 1,875,872 - Psest_1775 0.60 +0.9 1,876,039 + Psest_1775 0.79 +0.1
Or see this region's nucleotide sequence