Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1774

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1772 and Psest_1773 are separated by 190 nucleotidesPsest_1773 and Psest_1774 are separated by 28 nucleotidesPsest_1774 and Psest_1775 are separated by 85 nucleotides Psest_1772: Psest_1772 - Aspartate/tyrosine/aromatic aminotransferase, at 1,872,940 to 1,874,151 _1772 Psest_1773: Psest_1773 - methionine-R-sulfoxide reductase, at 1,874,342 to 1,874,740 _1773 Psest_1774: Psest_1774 - Glutathione peroxidase, at 1,874,769 to 1,875,251 _1774 Psest_1775: Psest_1775 - Predicted ATPase (AAA+ superfamily), at 1,875,337 to 1,876,227 _1775 Position (kb) 1874 1875 1876Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1873.859 kb on + strand, within Psest_1772at 1873.859 kb on + strand, within Psest_1772at 1873.859 kb on + strand, within Psest_1772at 1873.860 kb on - strand, within Psest_1772at 1873.860 kb on - strand, within Psest_1772at 1873.860 kb on - strand, within Psest_1772at 1873.860 kb on - strand, within Psest_1772at 1873.860 kb on - strand, within Psest_1772at 1873.860 kb on - strand, within Psest_1772at 1873.904 kb on + strand, within Psest_1772at 1873.904 kb on + strand, within Psest_1772at 1874.111 kb on + strandat 1874.279 kb on + strandat 1874.279 kb on + strandat 1874.279 kb on + strandat 1874.279 kb on + strandat 1874.280 kb on - strandat 1874.280 kb on - strandat 1874.307 kb on - strandat 1874.337 kb on + strandat 1874.338 kb on - strandat 1874.338 kb on - strandat 1874.338 kb on - strandat 1874.447 kb on + strand, within Psest_1773at 1874.447 kb on + strand, within Psest_1773at 1874.447 kb on + strand, within Psest_1773at 1874.448 kb on - strand, within Psest_1773at 1874.448 kb on - strand, within Psest_1773at 1874.448 kb on - strand, within Psest_1773at 1874.549 kb on + strand, within Psest_1773at 1874.550 kb on - strand, within Psest_1773at 1874.550 kb on - strand, within Psest_1773at 1874.895 kb on + strand, within Psest_1774at 1874.896 kb on - strand, within Psest_1774at 1875.195 kb on + strand, within Psest_1774at 1875.289 kb on + strandat 1875.331 kb on + strandat 1875.664 kb on + strand, within Psest_1775at 1875.665 kb on - strand, within Psest_1775at 1875.665 kb on - strand, within Psest_1775at 1875.740 kb on + strand, within Psest_1775at 1875.740 kb on + strand, within Psest_1775at 1875.740 kb on + strand, within Psest_1775at 1875.741 kb on - strand, within Psest_1775at 1875.741 kb on - strand, within Psest_1775at 1875.872 kb on - strand, within Psest_1775at 1876.039 kb on + strand, within Psest_1775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,873,859 + Psest_1772 0.76 -2.1
1,873,859 + Psest_1772 0.76 -2.3
1,873,859 + Psest_1772 0.76 -0.9
1,873,860 - Psest_1772 0.76 -4.4
1,873,860 - Psest_1772 0.76 -1.8
1,873,860 - Psest_1772 0.76 -0.9
1,873,860 - Psest_1772 0.76 -3.8
1,873,860 - Psest_1772 0.76 -2.6
1,873,860 - Psest_1772 0.76 -0.4
1,873,904 + Psest_1772 0.80 -2.5
1,873,904 + Psest_1772 0.80 -1.9
1,874,111 + -2.3
1,874,279 + -2.2
1,874,279 + -3.7
1,874,279 + -2.3
1,874,279 + -4.0
1,874,280 - -0.1
1,874,280 - -0.3
1,874,307 - -2.0
1,874,337 + +0.4
1,874,338 - +0.5
1,874,338 - -0.7
1,874,338 - +0.2
1,874,447 + Psest_1773 0.26 -0.5
1,874,447 + Psest_1773 0.26 +0.3
1,874,447 + Psest_1773 0.26 -0.1
1,874,448 - Psest_1773 0.27 +2.5
1,874,448 - Psest_1773 0.27 -0.1
1,874,448 - Psest_1773 0.27 -1.2
1,874,549 + Psest_1773 0.52 +0.5
1,874,550 - Psest_1773 0.52 +0.1
1,874,550 - Psest_1773 0.52 +0.5
1,874,895 + Psest_1774 0.26 -0.6
1,874,896 - Psest_1774 0.26 -0.3
1,875,195 + Psest_1774 0.88 -1.5
1,875,289 + -0.7
1,875,331 + -0.9
1,875,664 + Psest_1775 0.37 +0.4
1,875,665 - Psest_1775 0.37 +0.5
1,875,665 - Psest_1775 0.37 -1.2
1,875,740 + Psest_1775 0.45 -0.0
1,875,740 + Psest_1775 0.45 +0.2
1,875,740 + Psest_1775 0.45 +0.5
1,875,741 - Psest_1775 0.45 +1.0
1,875,741 - Psest_1775 0.45 +0.6
1,875,872 - Psest_1775 0.60 +0.9
1,876,039 + Psest_1775 0.79 +0.1

Or see this region's nucleotide sequence