Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1656

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1655 and Psest_1656 are separated by 3 nucleotidesPsest_1656 and Psest_1657 overlap by 8 nucleotidesPsest_1657 and Psest_1658 are separated by 2 nucleotides Psest_1655: Psest_1655 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 1,764,872 to 1,766,209 _1655 Psest_1656: Psest_1656 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 1,766,213 to 1,767,424 _1656 Psest_1657: Psest_1657 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 1,767,417 to 1,768,211 _1657 Psest_1658: Psest_1658 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 1,768,214 to 1,768,882 _1658 Position (kb) 1766 1767 1768Strain fitness (log2 ratio) -3 -2 -1 0 1at 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.921 kb on + strand, within Psest_1655at 1766.135 kb on + strandat 1766.135 kb on + strandat 1766.135 kb on + strandat 1766.135 kb on + strandat 1766.270 kb on + strandat 1766.401 kb on + strand, within Psest_1656at 1766.576 kb on + strand, within Psest_1656at 1766.576 kb on + strand, within Psest_1656at 1766.591 kb on + strand, within Psest_1656at 1766.591 kb on + strand, within Psest_1656at 1767.172 kb on + strand, within Psest_1656at 1767.172 kb on + strand, within Psest_1656at 1767.415 kb on + strandat 1767.415 kb on + strandat 1767.415 kb on + strandat 1767.422 kb on + strandat 1767.798 kb on + strand, within Psest_1657at 1767.798 kb on + strand, within Psest_1657at 1767.798 kb on + strand, within Psest_1657at 1767.800 kb on + strand, within Psest_1657at 1767.800 kb on + strand, within Psest_1657at 1767.800 kb on + strand, within Psest_1657at 1768.187 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,765,877 + Psest_1655 0.75 -0.2
1,765,877 + Psest_1655 0.75 -0.7
1,765,877 + Psest_1655 0.75 -0.2
1,765,877 + Psest_1655 0.75 +0.1
1,765,877 + Psest_1655 0.75 -1.1
1,765,919 + Psest_1655 0.78 +0.8
1,765,919 + Psest_1655 0.78 -1.0
1,765,919 + Psest_1655 0.78 +1.4
1,765,919 + Psest_1655 0.78 +0.1
1,765,919 + Psest_1655 0.78 -1.4
1,765,919 + Psest_1655 0.78 -0.3
1,765,919 + Psest_1655 0.78 +0.9
1,765,919 + Psest_1655 0.78 -0.1
1,765,919 + Psest_1655 0.78 -0.4
1,765,919 + Psest_1655 0.78 -1.1
1,765,919 + Psest_1655 0.78 -1.4
1,765,919 + Psest_1655 0.78 +0.1
1,765,920 - Psest_1655 0.78 +0.6
1,765,920 - Psest_1655 0.78 +0.3
1,765,920 - Psest_1655 0.78 +0.4
1,765,920 - Psest_1655 0.78 -0.4
1,765,921 + Psest_1655 0.78 -2.5
1,766,135 + -0.1
1,766,135 + -0.4
1,766,135 + -0.6
1,766,135 + -1.4
1,766,270 + -1.7
1,766,401 + Psest_1656 0.16 -1.4
1,766,576 + Psest_1656 0.30 +0.7
1,766,576 + Psest_1656 0.30 -1.5
1,766,591 + Psest_1656 0.31 -0.9
1,766,591 + Psest_1656 0.31 -2.8
1,767,172 + Psest_1656 0.79 -0.1
1,767,172 + Psest_1656 0.79 +0.5
1,767,415 + +0.5
1,767,415 + -0.3
1,767,415 + -0.4
1,767,422 + +0.2
1,767,798 + Psest_1657 0.48 -0.7
1,767,798 + Psest_1657 0.48 +0.7
1,767,798 + Psest_1657 0.48 +0.9
1,767,800 + Psest_1657 0.48 -0.9
1,767,800 + Psest_1657 0.48 -1.1
1,767,800 + Psest_1657 0.48 +1.3
1,768,187 + +0.7

Or see this region's nucleotide sequence