Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1056 and Psest_1057 overlap by 4 nucleotides Psest_1057 and Psest_1058 are separated by 9 nucleotides Psest_1058 and Psest_1059 are separated by 565 nucleotides
Psest_1056: Psest_1056 - 2-isopropylmalate synthase, bacterial type, at 1,145,285 to 1,146,829
_1056
Psest_1057: Psest_1057 - hypothetical protein, at 1,146,826 to 1,147,635
_1057
Psest_1058: Psest_1058 - ribosomal-protein-alanine acetyltransferase, at 1,147,645 to 1,148,097
_1058
Psest_1059: Psest_1059 - hypothetical protein, at 1,148,663 to 1,149,205
_1059
Position (kb)
1147
1148
1149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1146.764 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.637 kb on + strand at 1147.712 kb on - strand, within Psest_1058 at 1147.768 kb on + strand, within Psest_1058 at 1147.961 kb on + strand, within Psest_1058 at 1148.036 kb on - strand, within Psest_1058 at 1148.038 kb on + strand, within Psest_1058 at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.230 kb on + strand at 1148.230 kb on + strand at 1148.409 kb on - strand at 1148.561 kb on + strand at 1148.561 kb on + strand at 1148.562 kb on - strand at 1148.562 kb on - strand at 1148.562 kb on - strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.587 kb on - strand at 1148.610 kb on + strand at 1148.610 kb on + strand at 1148.611 kb on - strand at 1148.611 kb on - strand at 1148.611 kb on - strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.664 kb on + strand at 1148.664 kb on + strand at 1148.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,146,764 + +0.5 1,147,625 + +0.9 1,147,625 + +0.4 1,147,625 + +1.6 1,147,625 + +0.1 1,147,625 + +0.5 1,147,625 + -0.9 1,147,625 + +0.0 1,147,625 + -0.7 1,147,625 + -1.0 1,147,626 - -0.5 1,147,626 - +0.4 1,147,626 - -0.5 1,147,626 - +0.4 1,147,626 - -0.7 1,147,626 - -0.5 1,147,626 - -0.5 1,147,626 - +0.0 1,147,626 - -1.4 1,147,626 - -0.3 1,147,626 - -0.7 1,147,626 - -1.5 1,147,626 - -0.2 1,147,626 - -1.3 1,147,637 + -0.3 1,147,712 - Psest_1058 0.15 -1.4 1,147,768 + Psest_1058 0.27 -0.7 1,147,961 + Psest_1058 0.70 +0.2 1,148,036 - Psest_1058 0.86 -1.9 1,148,038 + Psest_1058 0.87 -2.8 1,148,082 + -0.0 1,148,082 + -0.1 1,148,082 + -0.7 1,148,082 + -0.9 1,148,082 + +0.5 1,148,083 - -0.4 1,148,083 - +2.1 1,148,083 - -1.7 1,148,083 - -1.1 1,148,230 + -0.0 1,148,230 + -0.3 1,148,409 - +0.9 1,148,561 + -1.2 1,148,561 + -0.1 1,148,562 - -0.6 1,148,562 - +0.6 1,148,562 - +0.3 1,148,580 + -0.9 1,148,580 + +0.8 1,148,580 + +0.1 1,148,580 + +0.1 1,148,581 - +1.1 1,148,581 - +0.3 1,148,581 - -0.9 1,148,581 - +0.4 1,148,587 - +0.0 1,148,610 + -0.3 1,148,610 + -0.1 1,148,611 - -0.2 1,148,611 - -0.5 1,148,611 - +0.4 1,148,612 + +0.5 1,148,612 + -0.4 1,148,612 + +0.4 1,148,612 + +0.2 1,148,613 - +0.0 1,148,613 - -1.9 1,148,613 - -0.0 1,148,613 - -0.7 1,148,613 - -0.4 1,148,664 + +1.1 1,148,664 + +0.5 1,148,665 - +1.1
Or see this region's nucleotide sequence