Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1058

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1056 and Psest_1057 overlap by 4 nucleotidesPsest_1057 and Psest_1058 are separated by 9 nucleotidesPsest_1058 and Psest_1059 are separated by 565 nucleotides Psest_1056: Psest_1056 - 2-isopropylmalate synthase, bacterial type, at 1,145,285 to 1,146,829 _1056 Psest_1057: Psest_1057 - hypothetical protein, at 1,146,826 to 1,147,635 _1057 Psest_1058: Psest_1058 - ribosomal-protein-alanine acetyltransferase, at 1,147,645 to 1,148,097 _1058 Psest_1059: Psest_1059 - hypothetical protein, at 1,148,663 to 1,149,205 _1059 Position (kb) 1147 1148 1149Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1146.764 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.625 kb on + strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.626 kb on - strandat 1147.637 kb on + strandat 1147.712 kb on - strand, within Psest_1058at 1147.768 kb on + strand, within Psest_1058at 1147.961 kb on + strand, within Psest_1058at 1148.036 kb on - strand, within Psest_1058at 1148.038 kb on + strand, within Psest_1058at 1148.082 kb on + strandat 1148.082 kb on + strandat 1148.082 kb on + strandat 1148.082 kb on + strandat 1148.082 kb on + strandat 1148.083 kb on - strandat 1148.083 kb on - strandat 1148.083 kb on - strandat 1148.083 kb on - strandat 1148.230 kb on + strandat 1148.230 kb on + strandat 1148.409 kb on - strandat 1148.561 kb on + strandat 1148.561 kb on + strandat 1148.562 kb on - strandat 1148.562 kb on - strandat 1148.562 kb on - strandat 1148.580 kb on + strandat 1148.580 kb on + strandat 1148.580 kb on + strandat 1148.580 kb on + strandat 1148.581 kb on - strandat 1148.581 kb on - strandat 1148.581 kb on - strandat 1148.581 kb on - strandat 1148.587 kb on - strandat 1148.610 kb on + strandat 1148.610 kb on + strandat 1148.611 kb on - strandat 1148.611 kb on - strandat 1148.611 kb on - strandat 1148.612 kb on + strandat 1148.612 kb on + strandat 1148.612 kb on + strandat 1148.612 kb on + strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.613 kb on - strandat 1148.664 kb on + strandat 1148.664 kb on + strandat 1148.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,146,764 + +0.5
1,147,625 + +0.9
1,147,625 + +0.4
1,147,625 + +1.6
1,147,625 + +0.1
1,147,625 + +0.5
1,147,625 + -0.9
1,147,625 + +0.0
1,147,625 + -0.7
1,147,625 + -1.0
1,147,626 - -0.5
1,147,626 - +0.4
1,147,626 - -0.5
1,147,626 - +0.4
1,147,626 - -0.7
1,147,626 - -0.5
1,147,626 - -0.5
1,147,626 - +0.0
1,147,626 - -1.4
1,147,626 - -0.3
1,147,626 - -0.7
1,147,626 - -1.5
1,147,626 - -0.2
1,147,626 - -1.3
1,147,637 + -0.3
1,147,712 - Psest_1058 0.15 -1.4
1,147,768 + Psest_1058 0.27 -0.7
1,147,961 + Psest_1058 0.70 +0.2
1,148,036 - Psest_1058 0.86 -1.9
1,148,038 + Psest_1058 0.87 -2.8
1,148,082 + -0.0
1,148,082 + -0.1
1,148,082 + -0.7
1,148,082 + -0.9
1,148,082 + +0.5
1,148,083 - -0.4
1,148,083 - +2.1
1,148,083 - -1.7
1,148,083 - -1.1
1,148,230 + -0.0
1,148,230 + -0.3
1,148,409 - +0.9
1,148,561 + -1.2
1,148,561 + -0.1
1,148,562 - -0.6
1,148,562 - +0.6
1,148,562 - +0.3
1,148,580 + -0.9
1,148,580 + +0.8
1,148,580 + +0.1
1,148,580 + +0.1
1,148,581 - +1.1
1,148,581 - +0.3
1,148,581 - -0.9
1,148,581 - +0.4
1,148,587 - +0.0
1,148,610 + -0.3
1,148,610 + -0.1
1,148,611 - -0.2
1,148,611 - -0.5
1,148,611 - +0.4
1,148,612 + +0.5
1,148,612 + -0.4
1,148,612 + +0.4
1,148,612 + +0.2
1,148,613 - +0.0
1,148,613 - -1.9
1,148,613 - -0.0
1,148,613 - -0.7
1,148,613 - -0.4
1,148,664 + +1.1
1,148,664 + +0.5
1,148,665 - +1.1

Or see this region's nucleotide sequence