Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4235

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4234 and Psest_4235 are separated by 43 nucleotidesPsest_4235 and Psest_4236 are separated by 231 nucleotides Psest_4234: Psest_4234 - Acyl-CoA dehydrogenases, at 4,416,022 to 4,417,218 _4234 Psest_4235: Psest_4235 - 3-hydroxyacyl-CoA dehydrogenase, at 4,417,262 to 4,419,367 _4235 Psest_4236: Psest_4236 - Predicted signal transduction protein, at 4,419,599 to 4,420,807 _4236 Position (kb) 4417 4418 4419 4420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4416.503 kb on + strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.504 kb on - strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.768 kb on - strand, within Psest_4234at 4416.871 kb on - strand, within Psest_4234at 4416.881 kb on + strand, within Psest_4234at 4416.882 kb on - strand, within Psest_4234at 4417.053 kb on - strand, within Psest_4234at 4417.053 kb on - strand, within Psest_4234at 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.205 kb on + strandat 4417.206 kb on - strandat 4417.206 kb on - strandat 4417.206 kb on - strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.263 kb on + strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.264 kb on - strandat 4417.407 kb on + strandat 4417.407 kb on + strandat 4417.408 kb on - strandat 4417.408 kb on - strandat 4417.408 kb on - strandat 4417.456 kb on - strandat 4417.456 kb on - strandat 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.551 kb on + strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.552 kb on - strand, within Psest_4235at 4417.609 kb on + strand, within Psest_4235at 4417.609 kb on + strand, within Psest_4235at 4417.609 kb on + strand, within Psest_4235at 4417.610 kb on - strand, within Psest_4235at 4417.656 kb on + strand, within Psest_4235at 4418.343 kb on + strand, within Psest_4235at 4418.343 kb on + strand, within Psest_4235at 4418.343 kb on + strand, within Psest_4235at 4418.344 kb on - strand, within Psest_4235at 4418.344 kb on - strand, within Psest_4235at 4418.344 kb on - strand, within Psest_4235at 4418.773 kb on + strand, within Psest_4235at 4418.773 kb on + strand, within Psest_4235at 4418.774 kb on - strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.814 kb on + strand, within Psest_4235at 4418.815 kb on - strand, within Psest_4235at 4418.815 kb on - strand, within Psest_4235at 4418.815 kb on - strand, within Psest_4235at 4418.815 kb on - strand, within Psest_4235at 4419.227 kb on + strandat 4419.227 kb on + strandat 4419.227 kb on + strandat 4419.228 kb on - strandat 4419.505 kb on + strandat 4419.506 kb on - strandat 4419.506 kb on - strandat 4419.559 kb on - strandat 4419.573 kb on + strandat 4419.662 kb on + strandat 4419.662 kb on + strandat 4419.662 kb on + strandat 4419.662 kb on + strandat 4419.662 kb on + strandat 4419.663 kb on - strandat 4419.667 kb on + strandat 4419.668 kb on - strandat 4419.668 kb on - strandat 4419.688 kb on + strandat 4419.688 kb on + strandat 4419.688 kb on + strandat 4419.688 kb on + strandat 4419.688 kb on + strandat 4419.770 kb on + strand, within Psest_4236at 4419.770 kb on + strand, within Psest_4236at 4419.770 kb on + strand, within Psest_4236at 4419.771 kb on - strand, within Psest_4236at 4419.771 kb on - strand, within Psest_4236at 4419.771 kb on - strand, within Psest_4236at 4419.771 kb on - strand, within Psest_4236at 4419.777 kb on + strand, within Psest_4236at 4419.777 kb on + strand, within Psest_4236at 4419.777 kb on + strand, within Psest_4236at 4419.777 kb on + strand, within Psest_4236at 4419.777 kb on + strand, within Psest_4236at 4419.778 kb on - strand, within Psest_4236at 4419.778 kb on - strand, within Psest_4236at 4419.778 kb on - strand, within Psest_4236at 4419.780 kb on + strand, within Psest_4236at 4419.780 kb on + strand, within Psest_4236at 4419.780 kb on + strand, within Psest_4236at 4419.781 kb on - strand, within Psest_4236at 4419.791 kb on + strand, within Psest_4236at 4419.791 kb on + strand, within Psest_4236at 4419.792 kb on - strand, within Psest_4236at 4419.792 kb on - strand, within Psest_4236at 4419.792 kb on - strand, within Psest_4236at 4420.313 kb on + strand, within Psest_4236at 4420.314 kb on - strand, within Psest_4236

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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4,416,503 + Psest_4234 0.40 -0.2
4,416,503 + Psest_4234 0.40 +0.0
4,416,503 + Psest_4234 0.40 +0.1
4,416,504 - Psest_4234 0.40 -0.6
4,416,767 + Psest_4234 0.62 +0.6
4,416,767 + Psest_4234 0.62 -0.7
4,416,767 + Psest_4234 0.62 +0.2
4,416,767 + Psest_4234 0.62 -1.5
4,416,767 + Psest_4234 0.62 -1.9
4,416,768 - Psest_4234 0.62 -0.3
4,416,871 - Psest_4234 0.71 +0.0
4,416,881 + Psest_4234 0.72 -0.6
4,416,882 - Psest_4234 0.72 +0.7
4,417,053 - Psest_4234 0.86 -1.0
4,417,053 - Psest_4234 0.86 +0.7
4,417,205 + +0.2
4,417,205 + +0.9
4,417,205 + -1.2
4,417,205 + -0.2
4,417,205 + +1.6
4,417,205 + -0.5
4,417,205 + +0.4
4,417,205 + -0.2
4,417,205 + -0.7
4,417,206 - +1.2
4,417,206 - -0.9
4,417,206 - -0.8
4,417,263 + -1.8
4,417,263 + -0.4
4,417,263 + +2.0
4,417,263 + +0.3
4,417,263 + -0.3
4,417,263 + -0.0
4,417,263 + +0.1
4,417,263 + +0.0
4,417,264 - -0.2
4,417,264 - -0.1
4,417,264 - -0.3
4,417,264 - -0.3
4,417,264 - +0.9
4,417,407 + +0.7
4,417,407 + -1.0
4,417,408 - +0.1
4,417,408 - -0.5
4,417,408 - -0.6
4,417,456 - -0.0
4,417,456 - -0.4
4,417,551 + Psest_4235 0.14 -1.1
4,417,551 + Psest_4235 0.14 -0.2
4,417,551 + Psest_4235 0.14 -0.3
4,417,551 + Psest_4235 0.14 +0.2
4,417,551 + Psest_4235 0.14 +1.1
4,417,551 + Psest_4235 0.14 -0.8
4,417,551 + Psest_4235 0.14 +0.1
4,417,551 + Psest_4235 0.14 -1.0
4,417,551 + Psest_4235 0.14 +0.5
4,417,551 + Psest_4235 0.14 +0.4
4,417,551 + Psest_4235 0.14 -1.5
4,417,551 + Psest_4235 0.14 +0.3
4,417,551 + Psest_4235 0.14 +0.4
4,417,551 + Psest_4235 0.14 -1.6
4,417,551 + Psest_4235 0.14 -0.7
4,417,551 + Psest_4235 0.14 +0.2
4,417,552 - Psest_4235 0.14 -0.2
4,417,552 - Psest_4235 0.14 +0.2
4,417,552 - Psest_4235 0.14 -0.6
4,417,552 - Psest_4235 0.14 +0.0
4,417,552 - Psest_4235 0.14 -2.1
4,417,552 - Psest_4235 0.14 -2.9
4,417,552 - Psest_4235 0.14 -0.9
4,417,552 - Psest_4235 0.14 -0.4
4,417,552 - Psest_4235 0.14 -1.4
4,417,552 - Psest_4235 0.14 +0.4
4,417,552 - Psest_4235 0.14 -0.3
4,417,552 - Psest_4235 0.14 -0.0
4,417,552 - Psest_4235 0.14 +0.0
4,417,552 - Psest_4235 0.14 -0.5
4,417,552 - Psest_4235 0.14 -1.5
4,417,552 - Psest_4235 0.14 -0.7
4,417,552 - Psest_4235 0.14 -0.1
4,417,609 + Psest_4235 0.16 +0.6
4,417,609 + Psest_4235 0.16 -1.0
4,417,609 + Psest_4235 0.16 -0.4
4,417,610 - Psest_4235 0.17 -0.6
4,417,656 + Psest_4235 0.19 +0.5
4,418,343 + Psest_4235 0.51 -0.5
4,418,343 + Psest_4235 0.51 +1.1
4,418,343 + Psest_4235 0.51 +0.5
4,418,344 - Psest_4235 0.51 -0.2
4,418,344 - Psest_4235 0.51 -0.6
4,418,344 - Psest_4235 0.51 -1.5
4,418,773 + Psest_4235 0.72 -0.8
4,418,773 + Psest_4235 0.72 +0.1
4,418,774 - Psest_4235 0.72 -0.3
4,418,814 + Psest_4235 0.74 +0.8
4,418,814 + Psest_4235 0.74 -0.1
4,418,814 + Psest_4235 0.74 -1.2
4,418,814 + Psest_4235 0.74 +0.4
4,418,814 + Psest_4235 0.74 -1.3
4,418,814 + Psest_4235 0.74 +1.0
4,418,814 + Psest_4235 0.74 +1.4
4,418,814 + Psest_4235 0.74 -0.0
4,418,814 + Psest_4235 0.74 -1.0
4,418,814 + Psest_4235 0.74 -0.6
4,418,815 - Psest_4235 0.74 -0.2
4,418,815 - Psest_4235 0.74 -2.1
4,418,815 - Psest_4235 0.74 -0.5
4,418,815 - Psest_4235 0.74 -0.3
4,419,227 + +2.0
4,419,227 + +0.1
4,419,227 + +1.1
4,419,228 - +0.3
4,419,505 + +0.3
4,419,506 - -0.4
4,419,506 - -0.4
4,419,559 - +1.0
4,419,573 + -1.0
4,419,662 + -1.0
4,419,662 + -1.4
4,419,662 + +0.6
4,419,662 + +0.6
4,419,662 + -0.8
4,419,663 - -0.6
4,419,667 + +0.0
4,419,668 - -0.0
4,419,668 - -0.9
4,419,688 + +0.9
4,419,688 + +0.4
4,419,688 + -0.4
4,419,688 + -1.0
4,419,688 + -0.9
4,419,770 + Psest_4236 0.14 +0.2
4,419,770 + Psest_4236 0.14 +0.2
4,419,770 + Psest_4236 0.14 +0.4
4,419,771 - Psest_4236 0.14 +0.6
4,419,771 - Psest_4236 0.14 -2.1
4,419,771 - Psest_4236 0.14 +0.3
4,419,771 - Psest_4236 0.14 -0.1
4,419,777 + Psest_4236 0.15 +0.6
4,419,777 + Psest_4236 0.15 -1.2
4,419,777 + Psest_4236 0.15 -0.8
4,419,777 + Psest_4236 0.15 -0.1
4,419,777 + Psest_4236 0.15 -0.1
4,419,778 - Psest_4236 0.15 -0.1
4,419,778 - Psest_4236 0.15 -0.8
4,419,778 - Psest_4236 0.15 +0.9
4,419,780 + Psest_4236 0.15 -0.4
4,419,780 + Psest_4236 0.15 -0.4
4,419,780 + Psest_4236 0.15 -0.3
4,419,781 - Psest_4236 0.15 +0.6
4,419,791 + Psest_4236 0.16 +0.6
4,419,791 + Psest_4236 0.16 -0.4
4,419,792 - Psest_4236 0.16 -0.6
4,419,792 - Psest_4236 0.16 +0.0
4,419,792 - Psest_4236 0.16 -0.5
4,420,313 + Psest_4236 0.59 -0.6
4,420,314 - Psest_4236 0.59 +0.1

Or see this region's nucleotide sequence