Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3192

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3191 and Psest_3192 overlap by 8 nucleotidesPsest_3192 and Psest_3193 are separated by 195 nucleotides Psest_3191: Psest_3191 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 3,362,987 to 3,363,970 _3191 Psest_3192: Psest_3192 - diguanylate cyclase (GGDEF) domain, at 3,363,963 to 3,365,093 _3192 Psest_3193: Psest_3193 - hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region, at 3,365,289 to 3,366,812 _3193 Position (kb) 3363 3364 3365 3366Strain fitness (log2 ratio) -1 0 1 2 3at 3363.380 kb on + strand, within Psest_3191at 3363.414 kb on + strand, within Psest_3191at 3363.414 kb on + strand, within Psest_3191at 3363.414 kb on + strand, within Psest_3191at 3363.977 kb on + strandat 3364.438 kb on + strand, within Psest_3192at 3364.439 kb on - strand, within Psest_3192at 3364.439 kb on - strand, within Psest_3192at 3364.654 kb on + strand, within Psest_3192at 3364.654 kb on + strand, within Psest_3192at 3364.654 kb on + strand, within Psest_3192at 3364.654 kb on + strand, within Psest_3192at 3364.655 kb on - strand, within Psest_3192at 3364.655 kb on - strand, within Psest_3192at 3364.655 kb on - strand, within Psest_3192at 3364.655 kb on - strand, within Psest_3192at 3364.657 kb on + strand, within Psest_3192at 3364.657 kb on + strand, within Psest_3192at 3364.759 kb on + strand, within Psest_3192at 3364.760 kb on - strand, within Psest_3192at 3364.760 kb on - strand, within Psest_3192at 3364.807 kb on + strand, within Psest_3192at 3364.807 kb on + strand, within Psest_3192at 3364.807 kb on + strand, within Psest_3192at 3364.808 kb on - strand, within Psest_3192at 3364.808 kb on - strand, within Psest_3192at 3364.808 kb on - strand, within Psest_3192at 3364.808 kb on - strand, within Psest_3192at 3364.808 kb on - strand, within Psest_3192at 3364.963 kb on + strand, within Psest_3192at 3364.963 kb on + strand, within Psest_3192at 3365.011 kb on + strandat 3365.011 kb on + strandat 3365.012 kb on - strandat 3365.012 kb on - strandat 3365.046 kb on + strandat 3365.046 kb on + strandat 3365.047 kb on - strandat 3365.047 kb on - strandat 3365.094 kb on - strandat 3365.152 kb on + strandat 3365.152 kb on + strandat 3365.209 kb on + strandat 3365.209 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,363,380 + Psest_3191 0.40 +0.4
3,363,414 + Psest_3191 0.43 +0.9
3,363,414 + Psest_3191 0.43 +1.2
3,363,414 + Psest_3191 0.43 -0.5
3,363,977 + +1.1
3,364,438 + Psest_3192 0.42 +3.0
3,364,439 - Psest_3192 0.42 +1.2
3,364,439 - Psest_3192 0.42 +2.5
3,364,654 + Psest_3192 0.61 +0.9
3,364,654 + Psest_3192 0.61 +1.9
3,364,654 + Psest_3192 0.61 +0.9
3,364,654 + Psest_3192 0.61 +0.3
3,364,655 - Psest_3192 0.61 +1.6
3,364,655 - Psest_3192 0.61 +1.7
3,364,655 - Psest_3192 0.61 +0.9
3,364,655 - Psest_3192 0.61 +1.1
3,364,657 + Psest_3192 0.61 +1.6
3,364,657 + Psest_3192 0.61 +2.0
3,364,759 + Psest_3192 0.70 +0.5
3,364,760 - Psest_3192 0.70 +0.9
3,364,760 - Psest_3192 0.70 +0.5
3,364,807 + Psest_3192 0.75 +0.1
3,364,807 + Psest_3192 0.75 +0.4
3,364,807 + Psest_3192 0.75 +1.0
3,364,808 - Psest_3192 0.75 +1.5
3,364,808 - Psest_3192 0.75 +1.7
3,364,808 - Psest_3192 0.75 +0.6
3,364,808 - Psest_3192 0.75 +1.4
3,364,808 - Psest_3192 0.75 +0.8
3,364,963 + Psest_3192 0.88 +1.4
3,364,963 + Psest_3192 0.88 -0.3
3,365,011 + +0.6
3,365,011 + -0.6
3,365,012 - +1.3
3,365,012 - +0.8
3,365,046 + +1.4
3,365,046 + +0.5
3,365,047 - +1.2
3,365,047 - +1.5
3,365,094 - +1.4
3,365,152 + +0.8
3,365,152 + +1.5
3,365,209 + +0.8
3,365,209 + +0.4

Or see this region's nucleotide sequence