Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4274

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4273 and Psest_4274 are separated by 85 nucleotidesPsest_4274 and Psest_4275 are separated by 111 nucleotides Psest_4273: Psest_4273 - Lysophospholipase, at 4,463,502 to 4,464,440 _4273 Psest_4274: Psest_4274 - hypothetical protein, at 4,464,526 to 4,465,095 _4274 Psest_4275: Psest_4275 - Outer membrane receptor for ferrienterochelin and colicins, at 4,465,207 to 4,467,270 _4275 Position (kb) 4464 4465 4466Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4463.533 kb on + strandat 4463.533 kb on + strandat 4463.533 kb on + strandat 4463.534 kb on - strandat 4463.534 kb on - strandat 4463.638 kb on + strand, within Psest_4273at 4463.638 kb on + strand, within Psest_4273at 4463.638 kb on + strand, within Psest_4273at 4463.638 kb on + strand, within Psest_4273at 4463.639 kb on - strand, within Psest_4273at 4463.639 kb on - strand, within Psest_4273at 4463.639 kb on - strand, within Psest_4273at 4463.639 kb on - strand, within Psest_4273at 4463.639 kb on - strand, within Psest_4273at 4463.639 kb on - strand, within Psest_4273at 4463.873 kb on - strand, within Psest_4273at 4464.197 kb on + strand, within Psest_4273at 4464.197 kb on + strand, within Psest_4273at 4464.197 kb on + strand, within Psest_4273at 4464.205 kb on + strand, within Psest_4273at 4464.205 kb on + strand, within Psest_4273at 4464.205 kb on + strand, within Psest_4273at 4464.205 kb on + strand, within Psest_4273at 4464.205 kb on + strand, within Psest_4273at 4464.206 kb on - strand, within Psest_4273at 4464.206 kb on - strand, within Psest_4273at 4464.208 kb on + strand, within Psest_4273at 4464.208 kb on + strand, within Psest_4273at 4464.208 kb on + strand, within Psest_4273at 4464.208 kb on + strand, within Psest_4273at 4464.208 kb on + strand, within Psest_4273at 4464.208 kb on + strand, within Psest_4273at 4464.209 kb on - strand, within Psest_4273at 4464.209 kb on - strand, within Psest_4273at 4464.274 kb on + strand, within Psest_4273at 4464.275 kb on - strand, within Psest_4273at 4464.275 kb on - strand, within Psest_4273at 4464.275 kb on - strand, within Psest_4273at 4464.275 kb on - strand, within Psest_4273at 4464.343 kb on + strand, within Psest_4273at 4464.343 kb on + strand, within Psest_4273at 4464.343 kb on + strand, within Psest_4273at 4464.344 kb on - strand, within Psest_4273at 4464.344 kb on - strand, within Psest_4273at 4464.344 kb on - strand, within Psest_4273at 4464.344 kb on - strand, within Psest_4273at 4464.545 kb on - strandat 4464.545 kb on - strandat 4464.545 kb on - strandat 4464.812 kb on - strand, within Psest_4274at 4464.920 kb on + strand, within Psest_4274at 4464.921 kb on - strand, within Psest_4274at 4464.952 kb on + strand, within Psest_4274at 4464.952 kb on + strand, within Psest_4274at 4464.953 kb on - strand, within Psest_4274at 4464.953 kb on - strand, within Psest_4274at 4465.316 kb on - strandat 4465.316 kb on - strandat 4465.807 kb on + strand, within Psest_4275at 4465.808 kb on - strand, within Psest_4275at 4465.808 kb on - strand, within Psest_4275at 4465.870 kb on + strand, within Psest_4275at 4465.871 kb on - strand, within Psest_4275at 4465.871 kb on - strand, within Psest_4275at 4466.042 kb on + strand, within Psest_4275at 4466.042 kb on + strand, within Psest_4275at 4466.042 kb on + strand, within Psest_4275at 4466.042 kb on + strand, within Psest_4275at 4466.042 kb on + strand, within Psest_4275at 4466.042 kb on + strand, within Psest_4275at 4466.043 kb on - strand, within Psest_4275at 4466.043 kb on - strand, within Psest_4275at 4466.079 kb on + strand, within Psest_4275at 4466.080 kb on - strand, within Psest_4275

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,463,533 + -1.2
4,463,533 + -1.8
4,463,533 + +0.6
4,463,534 - -0.1
4,463,534 - -0.3
4,463,638 + Psest_4273 0.14 +1.1
4,463,638 + Psest_4273 0.14 +1.5
4,463,638 + Psest_4273 0.14 -0.6
4,463,638 + Psest_4273 0.14 +0.8
4,463,639 - Psest_4273 0.15 -0.1
4,463,639 - Psest_4273 0.15 -1.0
4,463,639 - Psest_4273 0.15 -2.0
4,463,639 - Psest_4273 0.15 +1.0
4,463,639 - Psest_4273 0.15 +0.6
4,463,639 - Psest_4273 0.15 -0.2
4,463,873 - Psest_4273 0.40 -1.2
4,464,197 + Psest_4273 0.74 +1.2
4,464,197 + Psest_4273 0.74 +1.1
4,464,197 + Psest_4273 0.74 +2.8
4,464,205 + Psest_4273 0.75 +0.5
4,464,205 + Psest_4273 0.75 -0.3
4,464,205 + Psest_4273 0.75 +0.0
4,464,205 + Psest_4273 0.75 -1.5
4,464,205 + Psest_4273 0.75 +1.4
4,464,206 - Psest_4273 0.75 +0.3
4,464,206 - Psest_4273 0.75 +0.2
4,464,208 + Psest_4273 0.75 +1.1
4,464,208 + Psest_4273 0.75 +1.1
4,464,208 + Psest_4273 0.75 -2.5
4,464,208 + Psest_4273 0.75 +1.1
4,464,208 + Psest_4273 0.75 +0.4
4,464,208 + Psest_4273 0.75 +0.8
4,464,209 - Psest_4273 0.75 -0.9
4,464,209 - Psest_4273 0.75 -0.0
4,464,274 + Psest_4273 0.82 +1.8
4,464,275 - Psest_4273 0.82 +1.2
4,464,275 - Psest_4273 0.82 +0.6
4,464,275 - Psest_4273 0.82 +0.8
4,464,275 - Psest_4273 0.82 -0.1
4,464,343 + Psest_4273 0.90 +0.7
4,464,343 + Psest_4273 0.90 -0.8
4,464,343 + Psest_4273 0.90 +1.3
4,464,344 - Psest_4273 0.90 +0.8
4,464,344 - Psest_4273 0.90 +0.3
4,464,344 - Psest_4273 0.90 -1.6
4,464,344 - Psest_4273 0.90 +2.4
4,464,545 - +0.5
4,464,545 - +1.2
4,464,545 - -0.4
4,464,812 - Psest_4274 0.50 +0.4
4,464,920 + Psest_4274 0.69 +0.6
4,464,921 - Psest_4274 0.69 +2.3
4,464,952 + Psest_4274 0.75 +2.5
4,464,952 + Psest_4274 0.75 +1.1
4,464,953 - Psest_4274 0.75 +2.2
4,464,953 - Psest_4274 0.75 -0.2
4,465,316 - -0.8
4,465,316 - -0.3
4,465,807 + Psest_4275 0.29 -0.8
4,465,808 - Psest_4275 0.29 -0.0
4,465,808 - Psest_4275 0.29 -0.4
4,465,870 + Psest_4275 0.32 +0.6
4,465,871 - Psest_4275 0.32 -1.5
4,465,871 - Psest_4275 0.32 -0.4
4,466,042 + Psest_4275 0.40 -0.4
4,466,042 + Psest_4275 0.40 -0.2
4,466,042 + Psest_4275 0.40 +0.5
4,466,042 + Psest_4275 0.40 -0.2
4,466,042 + Psest_4275 0.40 -1.1
4,466,042 + Psest_4275 0.40 -1.4
4,466,043 - Psest_4275 0.41 +0.8
4,466,043 - Psest_4275 0.41 +1.0
4,466,079 + Psest_4275 0.42 +0.8
4,466,080 - Psest_4275 0.42 -0.3

Or see this region's nucleotide sequence