Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3150 and Psest_3151 are separated by 319 nucleotides Psest_3151 and Psest_3153 are separated by 278 nucleotides Psest_3153 and Psest_3154 overlap by 10 nucleotides
Psest_3150: Psest_3150 - hypothetical protein, at 3,320,339 to 3,321,598
_3150
Psest_3151: Psest_3151 - hypothetical protein, at 3,321,918 to 3,322,388
_3151
Psest_3153: Psest_3153 - hypothetical protein, at 3,322,667 to 3,322,885
_3153
Psest_3154: Psest_3154 - hypothetical protein, at 3,322,876 to 3,324,540
_3154
Position (kb)
3321
3322
3323 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3320.925 kb on + strand, within Psest_3150 at 3320.981 kb on - strand, within Psest_3150 at 3321.037 kb on + strand, within Psest_3150 at 3321.080 kb on - strand, within Psest_3150 at 3321.194 kb on - strand, within Psest_3150 at 3321.242 kb on + strand, within Psest_3150 at 3321.363 kb on + strand, within Psest_3150 at 3321.364 kb on - strand, within Psest_3150 at 3321.391 kb on + strand, within Psest_3150 at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.597 kb on - strand at 3321.649 kb on - strand at 3321.675 kb on - strand at 3321.675 kb on - strand at 3321.698 kb on - strand at 3321.932 kb on - strand at 3322.140 kb on + strand, within Psest_3151 at 3322.141 kb on - strand, within Psest_3151 at 3322.143 kb on - strand, within Psest_3151 at 3322.181 kb on + strand, within Psest_3151 at 3322.269 kb on + strand, within Psest_3151 at 3322.386 kb on + strand at 3323.145 kb on - strand, within Psest_3154 at 3323.206 kb on - strand, within Psest_3154 at 3323.239 kb on + strand, within Psest_3154 at 3323.375 kb on + strand, within Psest_3154 at 3323.375 kb on + strand, within Psest_3154 at 3323.375 kb on + strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154 at 3323.376 kb on - strand, within Psest_3154
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,320,925 + Psest_3150 0.47 +0.6 3,320,981 - Psest_3150 0.51 +3.4 3,321,037 + Psest_3150 0.55 +1.0 3,321,080 - Psest_3150 0.59 +0.6 3,321,194 - Psest_3150 0.68 -0.5 3,321,242 + Psest_3150 0.72 +1.8 3,321,363 + Psest_3150 0.81 +0.3 3,321,364 - Psest_3150 0.81 -1.3 3,321,391 + Psest_3150 0.83 +1.2 3,321,514 + +0.3 3,321,514 + +0.1 3,321,514 + -1.3 3,321,597 - +0.1 3,321,649 - +0.6 3,321,675 - +0.2 3,321,675 - +0.9 3,321,698 - +0.7 3,321,932 - -0.1 3,322,140 + Psest_3151 0.47 +0.4 3,322,141 - Psest_3151 0.47 +0.7 3,322,143 - Psest_3151 0.48 +1.4 3,322,181 + Psest_3151 0.56 -0.6 3,322,269 + Psest_3151 0.75 +0.8 3,322,386 + +1.8 3,323,145 - Psest_3154 0.16 +0.2 3,323,206 - Psest_3154 0.20 -0.2 3,323,239 + Psest_3154 0.22 +0.6 3,323,375 + Psest_3154 0.30 -1.1 3,323,375 + Psest_3154 0.30 +0.6 3,323,375 + Psest_3154 0.30 +1.3 3,323,376 - Psest_3154 0.30 +1.6 3,323,376 - Psest_3154 0.30 -0.3 3,323,376 - Psest_3154 0.30 -0.4 3,323,376 - Psest_3154 0.30 -0.8
Or see this region's nucleotide sequence