Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2766

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2765 and Psest_2766 are separated by 162 nucleotidesPsest_2766 and Psest_2767 are separated by 5 nucleotidesPsest_2767 and Psest_2768 are separated by 88 nucleotides Psest_2765: Psest_2765 - Collagenase and related proteases, at 2,959,976 to 2,961,976 _2765 Psest_2766: Psest_2766 - hypothetical protein, at 2,962,139 to 2,962,735 _2766 Psest_2767: Psest_2767 - Uncharacterized conserved protein, at 2,962,741 to 2,963,472 _2767 Psest_2768: Psest_2768 - Kef-type K+ transport systems, predicted NAD-binding component, at 2,963,561 to 2,964,349 _2768 Position (kb) 2962 2963Strain fitness (log2 ratio) -2 -1 0 1 2at 2961.404 kb on + strand, within Psest_2765at 2961.404 kb on + strand, within Psest_2765at 2961.405 kb on - strand, within Psest_2765at 2961.405 kb on - strand, within Psest_2765at 2961.405 kb on - strand, within Psest_2765at 2961.593 kb on + strand, within Psest_2765at 2961.594 kb on - strand, within Psest_2765at 2961.594 kb on - strand, within Psest_2765at 2961.594 kb on - strand, within Psest_2765at 2961.602 kb on + strand, within Psest_2765at 2961.602 kb on + strand, within Psest_2765at 2961.602 kb on + strand, within Psest_2765at 2961.603 kb on - strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.627 kb on - strand, within Psest_2765at 2961.627 kb on - strand, within Psest_2765at 2961.882 kb on + strandat 2961.882 kb on + strandat 2961.883 kb on - strandat 2961.883 kb on - strandat 2961.883 kb on - strandat 2962.059 kb on + strandat 2962.419 kb on + strand, within Psest_2766at 2962.886 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.899 kb on - strand, within Psest_2767at 2962.899 kb on - strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2963.260 kb on + strand, within Psest_2767at 2963.260 kb on + strand, within Psest_2767at 2963.261 kb on - strand, within Psest_2767at 2963.261 kb on - strand, within Psest_2767at 2963.261 kb on - strand, within Psest_2767at 2963.592 kb on + strandat 2963.592 kb on + strandat 2963.592 kb on + strandat 2963.593 kb on - strandat 2963.593 kb on - strandat 2963.615 kb on + strandat 2963.615 kb on + strandat 2963.615 kb on + strandat 2963.615 kb on + strandat 2963.667 kb on + strand, within Psest_2768at 2963.685 kb on - strand, within Psest_2768

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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2,961,404 + Psest_2765 0.71 +0.4
2,961,404 + Psest_2765 0.71 -0.1
2,961,405 - Psest_2765 0.71 -1.3
2,961,405 - Psest_2765 0.71 -1.3
2,961,405 - Psest_2765 0.71 +0.5
2,961,593 + Psest_2765 0.81 +0.8
2,961,594 - Psest_2765 0.81 +1.2
2,961,594 - Psest_2765 0.81 -0.2
2,961,594 - Psest_2765 0.81 -0.6
2,961,602 + Psest_2765 0.81 +1.0
2,961,602 + Psest_2765 0.81 +0.1
2,961,602 + Psest_2765 0.81 -0.3
2,961,603 - Psest_2765 0.81 -0.6
2,961,626 + Psest_2765 0.82 -0.1
2,961,626 + Psest_2765 0.82 +2.0
2,961,626 + Psest_2765 0.82 -0.2
2,961,626 + Psest_2765 0.82 +2.3
2,961,626 + Psest_2765 0.82 +0.7
2,961,627 - Psest_2765 0.83 -0.3
2,961,627 - Psest_2765 0.83 -1.0
2,961,882 + -1.6
2,961,882 + -0.7
2,961,883 - -0.6
2,961,883 - +1.4
2,961,883 - +0.1
2,962,059 + -0.7
2,962,419 + Psest_2766 0.47 +0.7
2,962,886 + Psest_2767 0.20 -1.4
2,962,898 + Psest_2767 0.21 -0.3
2,962,898 + Psest_2767 0.21 +0.9
2,962,898 + Psest_2767 0.21 +0.1
2,962,898 + Psest_2767 0.21 -0.5
2,962,899 - Psest_2767 0.22 +1.0
2,962,899 - Psest_2767 0.22 +0.7
2,962,902 + Psest_2767 0.22 +0.1
2,962,902 + Psest_2767 0.22 -1.7
2,962,902 + Psest_2767 0.22 +0.7
2,962,902 + Psest_2767 0.22 +0.4
2,962,902 + Psest_2767 0.22 -1.3
2,962,902 + Psest_2767 0.22 +0.0
2,962,902 + Psest_2767 0.22 +0.4
2,962,902 + Psest_2767 0.22 -0.3
2,962,902 + Psest_2767 0.22 -0.0
2,962,902 + Psest_2767 0.22 -0.4
2,962,902 + Psest_2767 0.22 +1.7
2,962,902 + Psest_2767 0.22 +2.2
2,962,902 + Psest_2767 0.22 +0.6
2,962,902 + Psest_2767 0.22 +0.3
2,962,902 + Psest_2767 0.22 +0.2
2,962,903 - Psest_2767 0.22 +0.0
2,962,903 - Psest_2767 0.22 +0.0
2,962,903 - Psest_2767 0.22 +0.0
2,962,903 - Psest_2767 0.22 -0.2
2,963,260 + Psest_2767 0.71 -1.9
2,963,260 + Psest_2767 0.71 +0.1
2,963,261 - Psest_2767 0.71 +0.0
2,963,261 - Psest_2767 0.71 -1.4
2,963,261 - Psest_2767 0.71 -0.8
2,963,592 + +0.6
2,963,592 + +0.6
2,963,592 + +0.0
2,963,593 - +0.1
2,963,593 - -0.8
2,963,615 + +0.9
2,963,615 + -0.3
2,963,615 + +1.2
2,963,615 + +0.4
2,963,667 + Psest_2768 0.13 +0.6
2,963,685 - Psest_2768 0.16 -0.6

Or see this region's nucleotide sequence