Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0036 and Psest_0037 are separated by 183 nucleotides Psest_0037 and Psest_0038 are separated by 79 nucleotides Psest_0038 and Psest_0039 are separated by 16 nucleotides
Psest_0036: Psest_0036 - Predicted membrane protein, at 36,918 to 38,621
_0036
Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874
_0037
Psest_0038: Psest_0038 - hypothetical protein, at 40,954 to 41,574
_0038
Psest_0039: Psest_0039 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 41,591 to 43,255
_0039
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 38.038 kb on + strand, within Psest_0036 at 38.203 kb on + strand, within Psest_0036 at 38.256 kb on + strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.429 kb on - strand, within Psest_0036 at 38.771 kb on - strand at 38.771 kb on - strand at 38.771 kb on - strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.919 kb on + strand at 39.307 kb on - strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.876 kb on + strand, within Psest_0037 at 40.057 kb on - strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.071 kb on + strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.072 kb on - strand, within Psest_0037 at 40.129 kb on - strand, within Psest_0037 at 40.129 kb on - strand, within Psest_0037 at 40.129 kb on - strand, within Psest_0037 at 40.159 kb on - strand, within Psest_0037 at 40.159 kb on - strand, within Psest_0037 at 40.159 kb on - strand, within Psest_0037 at 40.283 kb on + strand, within Psest_0037 at 40.283 kb on + strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.284 kb on - strand, within Psest_0037 at 40.562 kb on + strand, within Psest_0037 at 40.578 kb on + strand, within Psest_0037 at 40.579 kb on - strand, within Psest_0037 at 40.579 kb on - strand, within Psest_0037 at 40.579 kb on - strand, within Psest_0037 at 40.906 kb on + strand at 40.908 kb on + strand at 40.908 kb on + strand at 40.909 kb on - strand at 40.909 kb on - strand at 40.983 kb on + strand at 40.984 kb on - strand at 40.984 kb on - strand at 41.122 kb on + strand, within Psest_0038 at 41.122 kb on + strand, within Psest_0038 at 41.123 kb on - strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.476 kb on + strand, within Psest_0038 at 41.477 kb on - strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.676 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.686 kb on - strand at 41.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 37,855 + Psest_0036 0.55 -0.2 37,855 + Psest_0036 0.55 +0.7 37,855 + Psest_0036 0.55 +0.3 38,038 + Psest_0036 0.66 -0.2 38,203 + Psest_0036 0.75 -0.8 38,256 + Psest_0036 0.79 -0.4 38,257 - Psest_0036 0.79 +0.8 38,257 - Psest_0036 0.79 -0.4 38,429 - Psest_0036 0.89 +1.4 38,771 - -1.1 38,771 - -0.4 38,771 - -0.2 38,822 + +1.1 38,822 + +0.6 38,822 + -1.8 38,823 - -0.4 38,823 - -0.2 38,823 - -0.5 38,823 - -2.6 38,823 - -0.3 38,823 - -1.7 38,823 - +0.4 38,823 - -2.3 38,823 - +0.7 38,823 - +0.1 38,823 - -0.3 38,823 - -1.8 38,823 - -0.5 38,826 + -0.5 38,826 + +2.3 38,826 + +0.2 38,826 + -1.6 38,826 + -0.1 38,826 + -1.4 38,826 + +0.3 38,826 + -0.5 38,826 + +0.5 38,826 + -1.1 38,826 + -0.8 38,826 + +1.0 38,826 + -0.4 38,826 + +0.7 38,826 + -0.5 38,826 + +0.1 38,826 + +0.4 38,827 - -0.5 38,827 - +0.7 38,827 - -0.8 38,827 - -1.0 38,827 - -0.3 38,827 - -1.6 38,827 - -0.6 38,827 - -1.6 38,827 - -0.6 38,827 - +0.1 38,827 - -0.6 38,827 - -1.0 38,827 - -0.2 38,827 - -0.2 38,827 - +1.8 38,827 - +0.1 38,827 - +0.4 38,827 - -0.3 38,827 - -0.4 38,827 - -1.6 38,827 - -3.8 38,827 - -1.2 38,827 - +0.6 38,827 - -2.3 38,827 - -0.1 38,827 - +0.1 38,827 - -1.0 38,827 - -0.0 38,827 - -0.2 38,827 - +0.2 38,827 - +0.5 38,827 - -0.7 38,827 - -1.5 38,827 - -1.4 38,827 - -1.1 38,827 - +1.4 38,827 - +0.8 38,827 - +0.3 38,827 - -0.7 38,827 - +0.6 38,827 - -1.4 38,919 + -0.0 39,307 - Psest_0037 0.24 -1.5 39,441 + Psest_0037 0.31 -0.2 39,441 + Psest_0037 0.31 -1.8 39,441 + Psest_0037 0.31 +0.5 39,441 + Psest_0037 0.31 -0.8 39,441 + Psest_0037 0.31 -2.0 39,441 + Psest_0037 0.31 -2.3 39,441 + Psest_0037 0.31 -1.1 39,441 + Psest_0037 0.31 -2.4 39,441 + Psest_0037 0.31 -1.6 39,441 + Psest_0037 0.31 -0.2 39,441 + Psest_0037 0.31 -1.6 39,441 + Psest_0037 0.31 +0.2 39,442 - Psest_0037 0.31 -1.4 39,442 - Psest_0037 0.31 -0.1 39,442 - Psest_0037 0.31 +0.0 39,442 - Psest_0037 0.31 +0.3 39,442 - Psest_0037 0.31 +0.8 39,442 - Psest_0037 0.31 -0.6 39,555 + Psest_0037 0.36 -1.8 39,555 + Psest_0037 0.36 +0.5 39,564 + Psest_0037 0.37 -0.2 39,564 + Psest_0037 0.37 +0.3 39,564 + Psest_0037 0.37 -0.2 39,565 - Psest_0037 0.37 +0.2 39,565 - Psest_0037 0.37 -0.9 39,565 - Psest_0037 0.37 -2.6 39,565 - Psest_0037 0.37 +0.4 39,565 - Psest_0037 0.37 +0.1 39,565 - Psest_0037 0.37 +0.8 39,565 - Psest_0037 0.37 +0.2 39,876 + Psest_0037 0.52 -1.2 40,057 - Psest_0037 0.60 -0.1 40,071 + Psest_0037 0.61 -0.5 40,071 + Psest_0037 0.61 -0.1 40,071 + Psest_0037 0.61 -0.1 40,071 + Psest_0037 0.61 -0.3 40,071 + Psest_0037 0.61 -0.6 40,072 - Psest_0037 0.61 -2.3 40,072 - Psest_0037 0.61 -1.3 40,072 - Psest_0037 0.61 -0.3 40,072 - Psest_0037 0.61 -1.5 40,129 - Psest_0037 0.64 -1.5 40,129 - Psest_0037 0.64 -0.1 40,129 - Psest_0037 0.64 +0.4 40,159 - Psest_0037 0.65 +0.5 40,159 - Psest_0037 0.65 -1.3 40,159 - Psest_0037 0.65 -3.0 40,283 + Psest_0037 0.71 +1.0 40,283 + Psest_0037 0.71 -0.4 40,284 - Psest_0037 0.71 -1.0 40,284 - Psest_0037 0.71 -1.2 40,284 - Psest_0037 0.71 -2.0 40,284 - Psest_0037 0.71 -1.0 40,284 - Psest_0037 0.71 -1.8 40,562 + Psest_0037 0.85 -0.1 40,578 + Psest_0037 0.86 -1.3 40,579 - Psest_0037 0.86 +1.8 40,579 - Psest_0037 0.86 +0.3 40,579 - Psest_0037 0.86 -0.8 40,906 + -1.0 40,908 + -0.1 40,908 + +0.8 40,909 - +0.9 40,909 - -0.3 40,983 + -0.8 40,984 - -0.2 40,984 - +0.6 41,122 + Psest_0038 0.27 +0.8 41,122 + Psest_0038 0.27 +2.3 41,123 - Psest_0038 0.27 -1.2 41,440 + Psest_0038 0.78 +0.0 41,440 + Psest_0038 0.78 +0.4 41,440 + Psest_0038 0.78 -1.1 41,440 + Psest_0038 0.78 -0.2 41,441 - Psest_0038 0.78 -0.8 41,441 - Psest_0038 0.78 +1.2 41,441 - Psest_0038 0.78 +1.0 41,441 - Psest_0038 0.78 -0.9 41,476 + Psest_0038 0.84 +0.2 41,477 - Psest_0038 0.84 -0.3 41,478 + Psest_0038 0.84 -1.3 41,478 + Psest_0038 0.84 -0.5 41,478 + Psest_0038 0.84 +0.4 41,478 + Psest_0038 0.84 +1.2 41,479 - Psest_0038 0.85 -0.0 41,479 - Psest_0038 0.85 +1.4 41,479 - Psest_0038 0.85 +1.0 41,479 - Psest_0038 0.85 +0.5 41,479 - Psest_0038 0.85 -0.0 41,479 - Psest_0038 0.85 -0.1 41,479 - Psest_0038 0.85 +0.4 41,676 + +1.4 41,685 + +0.2 41,685 + +1.0 41,685 + +0.7 41,686 - -1.0 41,686 - +2.0
Or see this region's nucleotide sequence