Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2617

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2616 and Psest_2617 are separated by 1 nucleotidesPsest_2617 and Psest_2618 are separated by 10 nucleotidesPsest_2618 and Psest_2619 overlap by 4 nucleotides Psest_2616: Psest_2616 - Tfp pilus assembly protein PilF, at 2,798,607 to 2,799,650 _2616 Psest_2617: Psest_2617 - Flp pilus assembly protein TadC, at 2,799,652 to 2,800,620 _2617 Psest_2618: Psest_2618 - Flp pilus assembly protein TadB, at 2,800,631 to 2,801,617 _2618 Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038 _2619 Position (kb) 2799 2800 2801Strain fitness (log2 ratio) -2 -1 0 1 2at 2798.706 kb on + strandat 2798.737 kb on + strand, within Psest_2616at 2798.815 kb on + strand, within Psest_2616at 2798.815 kb on + strand, within Psest_2616at 2798.892 kb on - strand, within Psest_2616at 2798.911 kb on + strand, within Psest_2616at 2798.911 kb on + strand, within Psest_2616at 2798.911 kb on + strand, within Psest_2616at 2798.911 kb on + strand, within Psest_2616at 2798.912 kb on - strand, within Psest_2616at 2798.932 kb on + strand, within Psest_2616at 2798.933 kb on - strand, within Psest_2616at 2799.001 kb on + strand, within Psest_2616at 2799.001 kb on + strand, within Psest_2616at 2799.002 kb on - strand, within Psest_2616at 2799.002 kb on - strand, within Psest_2616at 2799.064 kb on + strand, within Psest_2616at 2799.065 kb on - strand, within Psest_2616at 2799.068 kb on - strand, within Psest_2616at 2799.124 kb on + strand, within Psest_2616at 2799.377 kb on + strand, within Psest_2616at 2799.556 kb on + strandat 2799.557 kb on - strandat 2799.818 kb on + strand, within Psest_2617at 2800.067 kb on - strand, within Psest_2617at 2800.067 kb on - strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.143 kb on - strand, within Psest_2617at 2800.143 kb on - strand, within Psest_2617at 2800.287 kb on - strand, within Psest_2617at 2800.613 kb on + strandat 2800.613 kb on + strandat 2800.613 kb on + strandat 2800.614 kb on - strandat 2800.614 kb on - strandat 2800.743 kb on + strand, within Psest_2618at 2800.744 kb on - strand, within Psest_2618at 2800.838 kb on + strand, within Psest_2618at 2801.013 kb on + strand, within Psest_2618at 2801.084 kb on + strand, within Psest_2618at 2801.084 kb on + strand, within Psest_2618at 2801.329 kb on - strand, within Psest_2618at 2801.421 kb on + strand, within Psest_2618at 2801.422 kb on - strand, within Psest_2618at 2801.422 kb on - strand, within Psest_2618at 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.596 kb on - strandat 2801.596 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
2,798,706 + +1.2
2,798,737 + Psest_2616 0.12 +0.0
2,798,815 + Psest_2616 0.20 +0.9
2,798,815 + Psest_2616 0.20 -0.2
2,798,892 - Psest_2616 0.27 -1.0
2,798,911 + Psest_2616 0.29 +0.8
2,798,911 + Psest_2616 0.29 -0.8
2,798,911 + Psest_2616 0.29 -0.7
2,798,911 + Psest_2616 0.29 +0.3
2,798,912 - Psest_2616 0.29 -0.8
2,798,932 + Psest_2616 0.31 +0.7
2,798,933 - Psest_2616 0.31 -0.2
2,799,001 + Psest_2616 0.38 -1.0
2,799,001 + Psest_2616 0.38 -0.0
2,799,002 - Psest_2616 0.38 -2.1
2,799,002 - Psest_2616 0.38 -0.5
2,799,064 + Psest_2616 0.44 +0.4
2,799,065 - Psest_2616 0.44 -0.5
2,799,068 - Psest_2616 0.44 -1.4
2,799,124 + Psest_2616 0.50 -0.0
2,799,377 + Psest_2616 0.74 +0.6
2,799,556 + -0.0
2,799,557 - +0.3
2,799,818 + Psest_2617 0.17 +0.8
2,800,067 - Psest_2617 0.43 +0.2
2,800,067 - Psest_2617 0.43 -0.2
2,800,142 + Psest_2617 0.51 +1.6
2,800,142 + Psest_2617 0.51 +0.7
2,800,142 + Psest_2617 0.51 -0.1
2,800,142 + Psest_2617 0.51 +1.3
2,800,142 + Psest_2617 0.51 +0.7
2,800,142 + Psest_2617 0.51 -0.0
2,800,142 + Psest_2617 0.51 +0.6
2,800,143 - Psest_2617 0.51 +0.8
2,800,143 - Psest_2617 0.51 +0.6
2,800,287 - Psest_2617 0.66 +1.6
2,800,613 + +0.2
2,800,613 + -0.1
2,800,613 + -0.5
2,800,614 - +0.3
2,800,614 - +0.2
2,800,743 + Psest_2618 0.11 +1.2
2,800,744 - Psest_2618 0.11 +0.1
2,800,838 + Psest_2618 0.21 -0.9
2,801,013 + Psest_2618 0.39 -0.7
2,801,084 + Psest_2618 0.46 -0.9
2,801,084 + Psest_2618 0.46 +0.2
2,801,329 - Psest_2618 0.71 +0.2
2,801,421 + Psest_2618 0.80 +1.8
2,801,422 - Psest_2618 0.80 -1.1
2,801,422 - Psest_2618 0.80 -0.0
2,801,595 + -1.9
2,801,595 + -0.3
2,801,595 + +0.1
2,801,595 + +0.5
2,801,596 - +1.2
2,801,596 - +0.9

Or see this region's nucleotide sequence