Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3804 and Psest_3805 are separated by 1 nucleotides Psest_3805 and Psest_3806 are separated by 41 nucleotides Psest_3806 and Psest_3807 are separated by 15 nucleotides Psest_3807 and Psest_3808 are separated by 57 nucleotides
Psest_3804: Psest_3804 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic, at 3,974,104 to 3,975,312
_3804
Psest_3805: Psest_3805 - deoxyuridine 5'-triphosphate nucleotidohydrolase (dut), at 3,975,314 to 3,975,769
_3805
Psest_3806: Psest_3806 - Phosphomannomutase, at 3,975,811 to 3,978,384
_3806
Psest_3807: Psest_3807 - acetylglutamate kinase, at 3,978,400 to 3,979,302
_3807
Psest_3808: Psest_3808 - Protein of unknown function (DUF3360)., at 3,979,360 to 3,980,835
_3808
Position (kb)
3975
3976
3977
3978
3979 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3975.783 kb on + strand at 3975.784 kb on - strand at 3975.784 kb on - strand at 3975.848 kb on + strand at 3975.849 kb on - strand at 3975.849 kb on - strand at 3975.906 kb on - strand at 3976.190 kb on + strand, within Psest_3806 at 3976.190 kb on + strand, within Psest_3806 at 3976.190 kb on + strand, within Psest_3806 at 3976.190 kb on + strand, within Psest_3806 at 3976.190 kb on + strand, within Psest_3806 at 3976.191 kb on - strand, within Psest_3806 at 3976.191 kb on - strand, within Psest_3806 at 3976.191 kb on - strand, within Psest_3806 at 3976.234 kb on - strand, within Psest_3806 at 3976.234 kb on - strand, within Psest_3806 at 3976.256 kb on + strand, within Psest_3806 at 3976.257 kb on - strand, within Psest_3806 at 3976.257 kb on - strand, within Psest_3806 at 3976.298 kb on - strand, within Psest_3806 at 3976.324 kb on + strand, within Psest_3806 at 3976.325 kb on - strand, within Psest_3806 at 3976.325 kb on - strand, within Psest_3806 at 3976.564 kb on + strand, within Psest_3806 at 3976.565 kb on - strand, within Psest_3806 at 3976.565 kb on - strand, within Psest_3806 at 3976.703 kb on + strand, within Psest_3806 at 3976.703 kb on + strand, within Psest_3806 at 3976.703 kb on + strand, within Psest_3806 at 3976.703 kb on + strand, within Psest_3806 at 3976.704 kb on - strand, within Psest_3806 at 3976.704 kb on - strand, within Psest_3806 at 3976.704 kb on - strand, within Psest_3806 at 3976.704 kb on - strand, within Psest_3806 at 3976.704 kb on - strand, within Psest_3806 at 3976.704 kb on - strand, within Psest_3806 at 3976.704 kb on - strand, within Psest_3806 at 3976.758 kb on - strand, within Psest_3806 at 3976.891 kb on + strand, within Psest_3806 at 3976.891 kb on + strand, within Psest_3806 at 3978.440 kb on + strand at 3979.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,975,783 + +0.8 3,975,784 - -2.3 3,975,784 - -1.8 3,975,848 + -1.2 3,975,849 - -1.9 3,975,849 - -1.6 3,975,906 - -2.3 3,976,190 + Psest_3806 0.15 +0.6 3,976,190 + Psest_3806 0.15 -0.8 3,976,190 + Psest_3806 0.15 -0.8 3,976,190 + Psest_3806 0.15 -1.5 3,976,190 + Psest_3806 0.15 -0.9 3,976,191 - Psest_3806 0.15 -1.7 3,976,191 - Psest_3806 0.15 -2.2 3,976,191 - Psest_3806 0.15 +1.3 3,976,234 - Psest_3806 0.16 -0.3 3,976,234 - Psest_3806 0.16 -1.9 3,976,256 + Psest_3806 0.17 -0.5 3,976,257 - Psest_3806 0.17 -1.5 3,976,257 - Psest_3806 0.17 +0.0 3,976,298 - Psest_3806 0.19 -1.6 3,976,324 + Psest_3806 0.20 -1.2 3,976,325 - Psest_3806 0.20 +0.6 3,976,325 - Psest_3806 0.20 -0.8 3,976,564 + Psest_3806 0.29 -2.2 3,976,565 - Psest_3806 0.29 -1.3 3,976,565 - Psest_3806 0.29 -0.2 3,976,703 + Psest_3806 0.35 -0.4 3,976,703 + Psest_3806 0.35 -1.7 3,976,703 + Psest_3806 0.35 -0.7 3,976,703 + Psest_3806 0.35 -2.3 3,976,704 - Psest_3806 0.35 -1.8 3,976,704 - Psest_3806 0.35 -1.5 3,976,704 - Psest_3806 0.35 -2.1 3,976,704 - Psest_3806 0.35 -0.8 3,976,704 - Psest_3806 0.35 -2.5 3,976,704 - Psest_3806 0.35 -3.3 3,976,704 - Psest_3806 0.35 -1.0 3,976,758 - Psest_3806 0.37 -0.5 3,976,891 + Psest_3806 0.42 -2.0 3,976,891 + Psest_3806 0.42 -1.6 3,978,440 + -0.5 3,979,344 - -1.0
Or see this region's nucleotide sequence