Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3960 and Psest_3961 overlap by 4 nucleotides Psest_3961 and Psest_3962 are separated by 117 nucleotides Psest_3962 and Psest_3963 are separated by 169 nucleotides
Psest_3960: Psest_3960 - 3'(2'),5'-bisphosphate nucleotidase, bacterial, at 4,126,860 to 4,127,678
_3960
Psest_3961: Psest_3961 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 4,127,675 to 4,128,241
_3961
Psest_3962: Psest_3962 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 4,128,359 to 4,129,039
_3962
Psest_3963: Psest_3963 - PAS domain S-box, at 4,129,209 to 4,131,770
_3963
Position (kb) 4128
4129
4130 Strain fitness (log2 ratio) -1
0
1
2 at 4127.666 kb on - strand at 4127.666 kb on - strand at 4127.721 kb on + strand at 4127.722 kb on - strand at 4127.722 kb on - strand at 4128.024 kb on + strand, within Psest_3961 at 4128.025 kb on - strand, within Psest_3961 at 4128.045 kb on + strand, within Psest_3961 at 4128.045 kb on + strand, within Psest_3961 at 4128.045 kb on + strand, within Psest_3961 at 4128.046 kb on - strand, within Psest_3961 at 4128.046 kb on - strand, within Psest_3961 at 4128.046 kb on - strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.135 kb on + strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.136 kb on - strand, within Psest_3961 at 4128.221 kb on + strand at 4128.221 kb on + strand at 4128.221 kb on + strand at 4128.221 kb on + strand at 4128.221 kb on + strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.222 kb on - strand at 4128.273 kb on + strand at 4128.273 kb on + strand at 4128.284 kb on - strand at 4128.573 kb on - strand, within Psest_3962 at 4128.704 kb on - strand, within Psest_3962 at 4129.072 kb on + strand at 4129.072 kb on + strand at 4129.072 kb on + strand at 4129.072 kb on + strand at 4129.072 kb on + strand at 4129.072 kb on + strand at 4129.073 kb on - strand at 4129.073 kb on - strand at 4129.073 kb on - strand at 4129.073 kb on - strand at 4129.073 kb on - strand at 4129.073 kb on - strand at 4129.073 kb on - strand at 4129.077 kb on + strand at 4129.077 kb on + strand at 4129.077 kb on + strand at 4129.078 kb on - strand at 4129.078 kb on - strand at 4129.078 kb on - strand at 4129.078 kb on - strand at 4129.176 kb on + strand at 4129.177 kb on - strand at 4129.198 kb on + strand at 4129.199 kb on - strand at 4129.219 kb on + strand at 4129.220 kb on - strand at 4129.220 kb on - strand at 4129.404 kb on + strand at 4129.404 kb on + strand at 4129.404 kb on + strand at 4129.404 kb on + strand at 4129.405 kb on - strand at 4129.540 kb on + strand, within Psest_3963 at 4129.719 kb on + strand, within Psest_3963 at 4129.719 kb on + strand, within Psest_3963 at 4129.719 kb on + strand, within Psest_3963 at 4129.719 kb on + strand, within Psest_3963 at 4129.719 kb on + strand, within Psest_3963 at 4129.719 kb on + strand, within Psest_3963 at 4129.720 kb on - strand, within Psest_3963 at 4129.720 kb on - strand, within Psest_3963 at 4129.720 kb on - strand, within Psest_3963 at 4129.720 kb on - strand, within Psest_3963 at 4129.829 kb on - strand, within Psest_3963 at 4129.847 kb on - strand, within Psest_3963
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 4,127,666 - -1.0 4,127,666 - +0.7 4,127,721 + +0.3 4,127,722 - +0.7 4,127,722 - +0.2 4,128,024 + Psest_3961 0.62 +1.0 4,128,025 - Psest_3961 0.62 +0.4 4,128,045 + Psest_3961 0.65 +0.6 4,128,045 + Psest_3961 0.65 +1.6 4,128,045 + Psest_3961 0.65 -0.7 4,128,046 - Psest_3961 0.65 -0.2 4,128,046 - Psest_3961 0.65 -0.0 4,128,046 - Psest_3961 0.65 +0.5 4,128,135 + Psest_3961 0.81 +1.4 4,128,135 + Psest_3961 0.81 +0.6 4,128,135 + Psest_3961 0.81 +1.9 4,128,135 + Psest_3961 0.81 +1.0 4,128,135 + Psest_3961 0.81 +0.0 4,128,135 + Psest_3961 0.81 +1.7 4,128,135 + Psest_3961 0.81 +0.0 4,128,135 + Psest_3961 0.81 +0.9 4,128,135 + Psest_3961 0.81 +0.4 4,128,135 + Psest_3961 0.81 -0.2 4,128,136 - Psest_3961 0.81 -1.6 4,128,136 - Psest_3961 0.81 +0.7 4,128,136 - Psest_3961 0.81 +1.4 4,128,136 - Psest_3961 0.81 +0.0 4,128,136 - Psest_3961 0.81 -0.3 4,128,136 - Psest_3961 0.81 +0.9 4,128,136 - Psest_3961 0.81 -0.6 4,128,136 - Psest_3961 0.81 -0.4 4,128,136 - Psest_3961 0.81 -0.4 4,128,136 - Psest_3961 0.81 +1.5 4,128,136 - Psest_3961 0.81 -1.2 4,128,136 - Psest_3961 0.81 +0.1 4,128,221 + +1.0 4,128,221 + +0.7 4,128,221 + +0.2 4,128,221 + -0.6 4,128,221 + +0.8 4,128,222 - -1.5 4,128,222 - -1.2 4,128,222 - -1.1 4,128,222 - +0.2 4,128,222 - +1.4 4,128,222 - -0.1 4,128,222 - +0.9 4,128,222 - -0.9 4,128,222 - +0.1 4,128,273 + +0.6 4,128,273 + +0.5 4,128,284 - +0.0 4,128,573 - Psest_3962 0.31 +0.9 4,128,704 - Psest_3962 0.51 +0.5 4,129,072 + -0.5 4,129,072 + -0.5 4,129,072 + -1.0 4,129,072 + +0.9 4,129,072 + +0.6 4,129,072 + +0.2 4,129,073 - -0.2 4,129,073 - -0.0 4,129,073 - -0.3 4,129,073 - +1.1 4,129,073 - -0.9 4,129,073 - +0.2 4,129,073 - +0.0 4,129,077 + +1.4 4,129,077 + +0.9 4,129,077 + +1.4 4,129,078 - +0.6 4,129,078 - +0.0 4,129,078 - -1.0 4,129,078 - +0.4 4,129,176 + +1.3 4,129,177 - +0.7 4,129,198 + +0.1 4,129,199 - +0.7 4,129,219 + +0.2 4,129,220 - -0.8 4,129,220 - +0.6 4,129,404 + -0.2 4,129,404 + -0.4 4,129,404 + +0.6 4,129,404 + -0.1 4,129,405 - -0.3 4,129,540 + Psest_3963 0.13 -0.1 4,129,719 + Psest_3963 0.20 +0.4 4,129,719 + Psest_3963 0.20 -1.4 4,129,719 + Psest_3963 0.20 +0.0 4,129,719 + Psest_3963 0.20 -0.1 4,129,719 + Psest_3963 0.20 -1.3 4,129,719 + Psest_3963 0.20 -1.1 4,129,720 - Psest_3963 0.20 -0.6 4,129,720 - Psest_3963 0.20 +0.4 4,129,720 - Psest_3963 0.20 -1.4 4,129,720 - Psest_3963 0.20 +2.0 4,129,829 - Psest_3963 0.24 -0.1 4,129,847 - Psest_3963 0.25 +0.1
Or see this region's nucleotide sequence