Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3838

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3837 and Psest_3838 are separated by 20 nucleotidesPsest_3838 and Psest_3839 are separated by 73 nucleotides Psest_3837: Psest_3837 - malate synthase G, at 4,007,300 to 4,009,480 _3837 Psest_3838: Psest_3838 - Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, at 4,009,501 to 4,009,905 _3838 Psest_3839: Psest_3839 - D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data), at 4,009,979 to 4,011,196 _3839 Position (kb) 4009 4010Strain fitness (log2 ratio) -1 0 1 2at 4008.519 kb on + strand, within Psest_3837at 4008.520 kb on - strand, within Psest_3837at 4009.065 kb on + strand, within Psest_3837at 4009.065 kb on + strand, within Psest_3837at 4009.105 kb on - strand, within Psest_3837at 4009.739 kb on + strand, within Psest_3838at 4009.740 kb on - strand, within Psest_3838at 4009.831 kb on - strand, within Psest_3838at 4009.925 kb on + strandat 4009.926 kb on - strandat 4009.926 kb on - strandat 4009.926 kb on - strandat 4009.926 kb on - strandat 4010.157 kb on + strand, within Psest_3839at 4010.158 kb on - strand, within Psest_3839at 4010.556 kb on + strand, within Psest_3839at 4010.557 kb on - strand, within Psest_3839

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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4,008,519 + Psest_3837 0.56 +0.6
4,008,520 - Psest_3837 0.56 +1.8
4,009,065 + Psest_3837 0.81 +0.6
4,009,065 + Psest_3837 0.81 +0.7
4,009,105 - Psest_3837 0.83 +0.2
4,009,739 + Psest_3838 0.59 +0.3
4,009,740 - Psest_3838 0.59 +0.5
4,009,831 - Psest_3838 0.81 +1.9
4,009,925 + +1.0
4,009,926 - +1.7
4,009,926 - +0.1
4,009,926 - +0.2
4,009,926 - +0.1
4,010,157 + Psest_3839 0.15 -1.2
4,010,158 - Psest_3839 0.15 +0.7
4,010,556 + Psest_3839 0.47 +0.8
4,010,557 - Psest_3839 0.47 +0.4

Or see this region's nucleotide sequence