Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1890

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1889 and Psest_1890 are separated by 28 nucleotidesPsest_1890 and Psest_1891 are separated by 19 nucleotidesPsest_1891 and Psest_1892 are separated by 174 nucleotides Psest_1889: Psest_1889 - tryptophanyl-tRNA synthetase, at 1,997,731 to 1,998,945 _1889 Psest_1890: Psest_1890 - Uncharacterized conserved protein, at 1,998,974 to 1,999,795 _1890 Psest_1891: Psest_1891 - segregation and condensation protein B, at 1,999,815 to 2,000,585 _1891 Psest_1892: Psest_1892 - 6-phosphogluconate dehydratase, at 2,000,760 to 2,002,589 _1892 Position (kb) 1998 1999 2000Strain fitness (log2 ratio) -2 -1 0 1 2at 1997.981 kb on + strand, within Psest_1889at 1998.074 kb on - strand, within Psest_1889at 1998.074 kb on - strand, within Psest_1889at 1998.074 kb on - strand, within Psest_1889at 1998.115 kb on - strand, within Psest_1889at 1998.119 kb on - strand, within Psest_1889at 1998.119 kb on - strand, within Psest_1889at 1998.166 kb on + strand, within Psest_1889at 1998.167 kb on - strand, within Psest_1889at 1998.253 kb on + strand, within Psest_1889at 1998.254 kb on - strand, within Psest_1889at 1998.329 kb on - strand, within Psest_1889at 1998.329 kb on - strand, within Psest_1889at 1998.350 kb on - strand, within Psest_1889at 1998.443 kb on - strand, within Psest_1889at 1998.565 kb on + strand, within Psest_1889at 1998.565 kb on + strand, within Psest_1889at 1998.566 kb on - strand, within Psest_1889at 1998.566 kb on - strand, within Psest_1889at 1998.566 kb on - strand, within Psest_1889at 1998.566 kb on - strand, within Psest_1889at 1998.632 kb on + strand, within Psest_1889at 1998.632 kb on + strand, within Psest_1889at 1998.632 kb on + strand, within Psest_1889at 1998.633 kb on - strand, within Psest_1889at 1998.633 kb on - strand, within Psest_1889at 1998.826 kb on + strandat 1998.827 kb on - strandat 1999.026 kb on + strandat 1999.043 kb on + strandat 1999.044 kb on - strandat 1999.079 kb on + strand, within Psest_1890at 1999.079 kb on + strand, within Psest_1890at 1999.079 kb on + strand, within Psest_1890at 1999.079 kb on + strand, within Psest_1890at 1999.079 kb on + strand, within Psest_1890at 1999.080 kb on - strand, within Psest_1890at 1999.080 kb on - strand, within Psest_1890at 1999.080 kb on - strand, within Psest_1890at 1999.145 kb on + strand, within Psest_1890at 1999.145 kb on + strand, within Psest_1890at 1999.146 kb on - strand, within Psest_1890at 1999.146 kb on - strand, within Psest_1890at 1999.146 kb on - strand, within Psest_1890at 1999.180 kb on + strand, within Psest_1890at 1999.208 kb on + strand, within Psest_1890at 1999.208 kb on + strand, within Psest_1890at 1999.208 kb on + strand, within Psest_1890at 1999.208 kb on + strand, within Psest_1890at 1999.208 kb on + strand, within Psest_1890at 1999.208 kb on + strand, within Psest_1890at 1999.209 kb on - strand, within Psest_1890at 1999.209 kb on - strand, within Psest_1890at 1999.209 kb on - strand, within Psest_1890at 1999.209 kb on - strand, within Psest_1890at 1999.209 kb on - strand, within Psest_1890at 1999.209 kb on - strand, within Psest_1890at 1999.263 kb on - strand, within Psest_1890at 1999.263 kb on - strand, within Psest_1890at 1999.552 kb on + strand, within Psest_1890at 1999.553 kb on - strand, within Psest_1890at 2000.719 kb on + strandat 2000.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,997,981 + Psest_1889 0.21 -1.9
1,998,074 - Psest_1889 0.28 +0.7
1,998,074 - Psest_1889 0.28 -1.2
1,998,074 - Psest_1889 0.28 +0.0
1,998,115 - Psest_1889 0.32 +0.8
1,998,119 - Psest_1889 0.32 +0.6
1,998,119 - Psest_1889 0.32 -0.3
1,998,166 + Psest_1889 0.36 +0.2
1,998,167 - Psest_1889 0.36 +1.5
1,998,253 + Psest_1889 0.43 +0.2
1,998,254 - Psest_1889 0.43 +1.8
1,998,329 - Psest_1889 0.49 -1.5
1,998,329 - Psest_1889 0.49 +0.7
1,998,350 - Psest_1889 0.51 +0.3
1,998,443 - Psest_1889 0.59 +1.0
1,998,565 + Psest_1889 0.69 -0.5
1,998,565 + Psest_1889 0.69 -0.4
1,998,566 - Psest_1889 0.69 +0.9
1,998,566 - Psest_1889 0.69 +0.9
1,998,566 - Psest_1889 0.69 +0.2
1,998,566 - Psest_1889 0.69 +1.4
1,998,632 + Psest_1889 0.74 +0.5
1,998,632 + Psest_1889 0.74 -1.1
1,998,632 + Psest_1889 0.74 -0.7
1,998,633 - Psest_1889 0.74 -0.5
1,998,633 - Psest_1889 0.74 +1.3
1,998,826 + -0.6
1,998,827 - +1.0
1,999,026 + +1.5
1,999,043 + +0.3
1,999,044 - +0.7
1,999,079 + Psest_1890 0.13 -0.6
1,999,079 + Psest_1890 0.13 +0.4
1,999,079 + Psest_1890 0.13 -0.3
1,999,079 + Psest_1890 0.13 +1.5
1,999,079 + Psest_1890 0.13 +1.3
1,999,080 - Psest_1890 0.13 +0.4
1,999,080 - Psest_1890 0.13 +0.9
1,999,080 - Psest_1890 0.13 +1.8
1,999,145 + Psest_1890 0.21 +0.6
1,999,145 + Psest_1890 0.21 +0.7
1,999,146 - Psest_1890 0.21 +0.6
1,999,146 - Psest_1890 0.21 +1.0
1,999,146 - Psest_1890 0.21 +0.3
1,999,180 + Psest_1890 0.25 -0.1
1,999,208 + Psest_1890 0.28 +1.2
1,999,208 + Psest_1890 0.28 +0.7
1,999,208 + Psest_1890 0.28 -0.7
1,999,208 + Psest_1890 0.28 +0.1
1,999,208 + Psest_1890 0.28 +0.5
1,999,208 + Psest_1890 0.28 +0.6
1,999,209 - Psest_1890 0.29 +0.7
1,999,209 - Psest_1890 0.29 -0.7
1,999,209 - Psest_1890 0.29 -1.9
1,999,209 - Psest_1890 0.29 +1.3
1,999,209 - Psest_1890 0.29 +0.9
1,999,209 - Psest_1890 0.29 +0.6
1,999,263 - Psest_1890 0.35 -0.5
1,999,263 - Psest_1890 0.35 +0.9
1,999,552 + Psest_1890 0.70 -0.4
1,999,553 - Psest_1890 0.70 +1.1
2,000,719 + +2.1
2,000,720 - +0.5

Or see this region's nucleotide sequence