Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1631

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1629 and Psest_1630 are separated by 6 nucleotidesPsest_1630 and Psest_1631 are separated by 96 nucleotidesPsest_1631 and Psest_1632 are separated by 0 nucleotidesPsest_1632 and Psest_1633 are separated by 179 nucleotides Psest_1629: Psest_1629 - hypothetical protein, at 1,731,030 to 1,731,410 _1629 Psest_1630: Psest_1630 - Transcriptional regulator, at 1,731,417 to 1,732,271 _1630 Psest_1631: Psest_1631 - Uncharacterized conserved small protein, at 1,732,368 to 1,732,604 _1631 Psest_1632: Psest_1632 - Predicted permeases, at 1,732,605 to 1,733,360 _1632 Psest_1633: Psest_1633 - Protein of unknown function (DUF3365)., at 1,733,540 to 1,734,097 _1633 Position (kb) 1732 1733Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1731.419 kb on - strandat 1731.440 kb on + strandat 1731.442 kb on + strandat 1731.443 kb on - strandat 1731.443 kb on - strandat 1731.443 kb on - strandat 1731.543 kb on + strand, within Psest_1630at 1731.543 kb on + strand, within Psest_1630at 1731.543 kb on + strand, within Psest_1630at 1731.543 kb on + strand, within Psest_1630at 1731.544 kb on - strand, within Psest_1630at 1731.639 kb on - strand, within Psest_1630at 1731.640 kb on + strand, within Psest_1630at 1731.641 kb on - strand, within Psest_1630at 1731.796 kb on - strand, within Psest_1630at 1731.796 kb on - strand, within Psest_1630at 1731.796 kb on - strand, within Psest_1630at 1731.861 kb on + strand, within Psest_1630at 1731.861 kb on + strand, within Psest_1630at 1731.861 kb on + strand, within Psest_1630at 1731.861 kb on + strand, within Psest_1630at 1731.862 kb on - strand, within Psest_1630at 1731.862 kb on - strand, within Psest_1630at 1731.862 kb on - strand, within Psest_1630at 1731.955 kb on + strand, within Psest_1630at 1731.955 kb on + strand, within Psest_1630at 1732.063 kb on - strand, within Psest_1630at 1732.063 kb on - strand, within Psest_1630at 1732.262 kb on - strandat 1732.322 kb on + strandat 1732.373 kb on + strandat 1732.374 kb on - strandat 1732.394 kb on + strand, within Psest_1631at 1732.394 kb on + strand, within Psest_1631at 1732.395 kb on - strand, within Psest_1631at 1732.699 kb on + strand, within Psest_1632at 1732.700 kb on - strand, within Psest_1632at 1732.700 kb on - strand, within Psest_1632at 1732.700 kb on - strand, within Psest_1632at 1732.792 kb on + strand, within Psest_1632at 1732.793 kb on - strand, within Psest_1632at 1732.793 kb on - strand, within Psest_1632at 1733.352 kb on + strandat 1733.352 kb on + strandat 1733.352 kb on + strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.461 kb on + strandat 1733.461 kb on + strandat 1733.461 kb on + strandat 1733.462 kb on - strandat 1733.462 kb on - strandat 1733.462 kb on - strandat 1733.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,731,419 - -0.1
1,731,440 + -0.3
1,731,442 + -0.2
1,731,443 - -0.2
1,731,443 - -1.3
1,731,443 - -1.3
1,731,543 + Psest_1630 0.15 +0.5
1,731,543 + Psest_1630 0.15 +1.1
1,731,543 + Psest_1630 0.15 -0.4
1,731,543 + Psest_1630 0.15 -2.3
1,731,544 - Psest_1630 0.15 +0.0
1,731,639 - Psest_1630 0.26 -1.2
1,731,640 + Psest_1630 0.26 +0.2
1,731,641 - Psest_1630 0.26 +0.2
1,731,796 - Psest_1630 0.44 -0.6
1,731,796 - Psest_1630 0.44 +1.1
1,731,796 - Psest_1630 0.44 +0.9
1,731,861 + Psest_1630 0.52 -1.4
1,731,861 + Psest_1630 0.52 -0.2
1,731,861 + Psest_1630 0.52 +0.5
1,731,861 + Psest_1630 0.52 +0.7
1,731,862 - Psest_1630 0.52 -1.5
1,731,862 - Psest_1630 0.52 -0.2
1,731,862 - Psest_1630 0.52 +0.2
1,731,955 + Psest_1630 0.63 +0.6
1,731,955 + Psest_1630 0.63 -0.6
1,732,063 - Psest_1630 0.76 +0.3
1,732,063 - Psest_1630 0.76 -2.1
1,732,262 - -0.0
1,732,322 + -0.8
1,732,373 + +0.1
1,732,374 - -0.5
1,732,394 + Psest_1631 0.11 +2.9
1,732,394 + Psest_1631 0.11 -0.3
1,732,395 - Psest_1631 0.11 +0.3
1,732,699 + Psest_1632 0.12 +0.5
1,732,700 - Psest_1632 0.13 -1.1
1,732,700 - Psest_1632 0.13 -0.7
1,732,700 - Psest_1632 0.13 +1.2
1,732,792 + Psest_1632 0.25 -0.3
1,732,793 - Psest_1632 0.25 -0.5
1,732,793 - Psest_1632 0.25 -0.1
1,733,352 + -1.0
1,733,352 + +1.5
1,733,352 + +0.9
1,733,353 - -0.1
1,733,353 - +1.2
1,733,353 - +1.2
1,733,353 - +0.6
1,733,353 - +0.1
1,733,353 - -1.9
1,733,353 - -1.9
1,733,353 - -0.0
1,733,461 + -1.8
1,733,461 + -0.1
1,733,461 + -2.1
1,733,462 - -1.8
1,733,462 - +0.3
1,733,462 - -0.7
1,733,511 + -0.8

Or see this region's nucleotide sequence