Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1428

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1427 and Psest_1428 are separated by 13 nucleotidesPsest_1428 and Psest_1429 are separated by 80 nucleotides Psest_1427: Psest_1427 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 1,535,817 to 1,536,839 _1427 Psest_1428: Psest_1428 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 1,536,853 to 1,537,941 _1428 Psest_1429: Psest_1429 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit, at 1,538,022 to 1,539,011 _1429 Position (kb) 1536 1537 1538Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1536.008 kb on - strand, within Psest_1427at 1536.008 kb on - strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.232 kb on + strand, within Psest_1427at 1536.233 kb on - strand, within Psest_1427at 1536.233 kb on - strand, within Psest_1427at 1536.233 kb on - strand, within Psest_1427at 1536.313 kb on + strand, within Psest_1427at 1536.314 kb on - strand, within Psest_1427at 1536.314 kb on - strand, within Psest_1427at 1536.314 kb on - strand, within Psest_1427at 1536.367 kb on + strand, within Psest_1427at 1536.421 kb on + strand, within Psest_1427at 1536.514 kb on + strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.515 kb on - strand, within Psest_1427at 1536.538 kb on + strand, within Psest_1427at 1536.538 kb on + strand, within Psest_1427at 1536.538 kb on + strand, within Psest_1427at 1536.539 kb on - strand, within Psest_1427at 1536.539 kb on - strand, within Psest_1427at 1536.539 kb on - strand, within Psest_1427at 1536.688 kb on + strand, within Psest_1427at 1536.688 kb on + strand, within Psest_1427at 1536.689 kb on - strand, within Psest_1427at 1536.825 kb on + strandat 1536.826 kb on - strandat 1536.826 kb on - strandat 1536.826 kb on - strandat 1537.394 kb on - strand, within Psest_1428at 1537.394 kb on - strand, within Psest_1428at 1537.394 kb on - strand, within Psest_1428at 1537.555 kb on + strand, within Psest_1428at 1537.589 kb on + strand, within Psest_1428at 1537.589 kb on + strand, within Psest_1428at 1537.791 kb on - strand, within Psest_1428at 1538.231 kb on - strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.681 kb on + strand, within Psest_1429at 1538.682 kb on - strand, within Psest_1429at 1538.682 kb on - strand, within Psest_1429at 1538.682 kb on - strand, within Psest_1429at 1538.682 kb on - strand, within Psest_1429at 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.923 kb on + strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strandat 1538.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,536,008 - Psest_1427 0.19 +0.3
1,536,008 - Psest_1427 0.19 +1.1
1,536,232 + Psest_1427 0.41 -0.6
1,536,232 + Psest_1427 0.41 -0.1
1,536,232 + Psest_1427 0.41 +0.3
1,536,232 + Psest_1427 0.41 +0.8
1,536,232 + Psest_1427 0.41 +0.2
1,536,233 - Psest_1427 0.41 -0.5
1,536,233 - Psest_1427 0.41 +0.7
1,536,233 - Psest_1427 0.41 -0.3
1,536,313 + Psest_1427 0.48 +0.8
1,536,314 - Psest_1427 0.49 +0.9
1,536,314 - Psest_1427 0.49 -0.1
1,536,314 - Psest_1427 0.49 -0.1
1,536,367 + Psest_1427 0.54 -1.6
1,536,421 + Psest_1427 0.59 -0.4
1,536,514 + Psest_1427 0.68 +0.3
1,536,515 - Psest_1427 0.68 -0.4
1,536,515 - Psest_1427 0.68 +0.2
1,536,515 - Psest_1427 0.68 +0.9
1,536,515 - Psest_1427 0.68 -3.0
1,536,538 + Psest_1427 0.70 -1.3
1,536,538 + Psest_1427 0.70 +0.0
1,536,538 + Psest_1427 0.70 -0.4
1,536,539 - Psest_1427 0.71 -0.2
1,536,539 - Psest_1427 0.71 -0.3
1,536,539 - Psest_1427 0.71 +0.9
1,536,688 + Psest_1427 0.85 -0.0
1,536,688 + Psest_1427 0.85 -0.4
1,536,689 - Psest_1427 0.85 +0.0
1,536,825 + +0.5
1,536,826 - -1.6
1,536,826 - -0.4
1,536,826 - +0.1
1,537,394 - Psest_1428 0.50 -2.1
1,537,394 - Psest_1428 0.50 +1.7
1,537,394 - Psest_1428 0.50 +0.5
1,537,555 + Psest_1428 0.64 +0.5
1,537,589 + Psest_1428 0.68 -0.6
1,537,589 + Psest_1428 0.68 +0.7
1,537,791 - Psest_1428 0.86 +0.9
1,538,231 - Psest_1429 0.21 +1.2
1,538,681 + Psest_1429 0.67 +0.4
1,538,681 + Psest_1429 0.67 +0.0
1,538,681 + Psest_1429 0.67 -0.3
1,538,681 + Psest_1429 0.67 -0.2
1,538,681 + Psest_1429 0.67 +1.4
1,538,681 + Psest_1429 0.67 -0.1
1,538,681 + Psest_1429 0.67 -0.5
1,538,681 + Psest_1429 0.67 -0.3
1,538,682 - Psest_1429 0.67 +0.0
1,538,682 - Psest_1429 0.67 +0.1
1,538,682 - Psest_1429 0.67 -0.1
1,538,682 - Psest_1429 0.67 -0.6
1,538,923 + -0.6
1,538,923 + +0.1
1,538,923 + +1.5
1,538,923 + -0.1
1,538,923 + +1.3
1,538,923 + -0.2
1,538,923 + -0.6
1,538,923 + -1.5
1,538,923 + -1.1
1,538,924 - +0.5
1,538,924 - +0.8
1,538,924 - -0.3
1,538,924 - +2.2
1,538,924 - +0.0
1,538,924 - +0.4
1,538,924 - -0.2
1,538,924 - +0.3
1,538,924 - -0.7
1,538,924 - -0.4
1,538,924 - +1.5

Or see this region's nucleotide sequence