Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0046

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0044 and Psest_0045 are separated by 414 nucleotidesPsest_0045 and Psest_0046 are separated by 179 nucleotidesPsest_0046 and Psest_0047 are separated by 284 nucleotides Psest_0044: Psest_0044 - Nuclease-related domain., at 47,308 to 47,583 _0044 Psest_0045: Psest_0045 - hypothetical protein, at 47,998 to 48,375 _0045 Psest_0046: Psest_0046 - Uncharacterized protein conserved in bacteria, at 48,555 to 49,013 _0046 Psest_0047: Psest_0047 - Predicted esterase of the alpha-beta hydrolase superfamily, at 49,298 to 50,521 _0047 Position (kb) 48 49 50Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 47.727 kb on - strandat 47.758 kb on + strandat 47.759 kb on - strandat 47.792 kb on + strandat 47.792 kb on + strandat 47.916 kb on + strandat 47.916 kb on + strandat 47.917 kb on - strandat 47.917 kb on - strandat 47.917 kb on - strandat 47.917 kb on - strandat 48.030 kb on - strandat 48.046 kb on - strand, within Psest_0045at 48.046 kb on - strand, within Psest_0045at 48.046 kb on - strand, within Psest_0045at 48.051 kb on - strand, within Psest_0045at 48.056 kb on + strand, within Psest_0045at 48.078 kb on - strand, within Psest_0045at 48.112 kb on + strand, within Psest_0045at 48.113 kb on - strand, within Psest_0045at 48.114 kb on + strand, within Psest_0045at 48.115 kb on - strand, within Psest_0045at 48.116 kb on + strand, within Psest_0045at 48.207 kb on - strand, within Psest_0045at 48.281 kb on - strand, within Psest_0045at 48.295 kb on + strand, within Psest_0045at 48.335 kb on - strand, within Psest_0045at 48.341 kb on - strandat 48.341 kb on - strandat 48.354 kb on - strandat 48.451 kb on - strandat 48.473 kb on - strandat 48.480 kb on + strandat 48.480 kb on + strandat 48.481 kb on - strandat 48.494 kb on + strandat 48.494 kb on + strandat 48.494 kb on + strandat 48.494 kb on + strandat 48.494 kb on + strandat 48.494 kb on + strandat 48.495 kb on - strandat 48.495 kb on - strandat 48.495 kb on - strandat 48.495 kb on - strandat 48.495 kb on - strandat 48.495 kb on - strandat 48.495 kb on - strandat 48.495 kb on - strandat 48.500 kb on + strandat 48.500 kb on + strandat 48.500 kb on + strandat 48.501 kb on - strandat 48.512 kb on - strandat 48.533 kb on - strandat 48.582 kb on - strandat 48.735 kb on + strand, within Psest_0046at 48.736 kb on - strand, within Psest_0046at 48.736 kb on - strand, within Psest_0046at 48.795 kb on - strand, within Psest_0046at 48.864 kb on + strand, within Psest_0046at 48.865 kb on - strand, within Psest_0046at 48.894 kb on + strand, within Psest_0046at 48.894 kb on + strand, within Psest_0046at 48.894 kb on + strand, within Psest_0046at 48.894 kb on + strand, within Psest_0046at 48.894 kb on + strand, within Psest_0046at 48.894 kb on + strand, within Psest_0046at 48.894 kb on + strand, within Psest_0046at 48.895 kb on - strand, within Psest_0046at 48.895 kb on - strand, within Psest_0046at 48.895 kb on - strand, within Psest_0046at 48.895 kb on - strand, within Psest_0046at 48.895 kb on - strand, within Psest_0046at 48.895 kb on - strand, within Psest_0046at 48.895 kb on - strand, within Psest_0046at 48.915 kb on + strand, within Psest_0046at 48.960 kb on + strand, within Psest_0046at 48.960 kb on + strand, within Psest_0046at 48.960 kb on + strand, within Psest_0046at 48.961 kb on - strand, within Psest_0046at 48.971 kb on + strandat 48.971 kb on + strandat 48.971 kb on + strandat 48.971 kb on + strandat 48.971 kb on + strandat 48.971 kb on + strandat 48.971 kb on + strandat 48.972 kb on - strandat 48.972 kb on - strandat 48.972 kb on - strandat 48.981 kb on + strandat 48.982 kb on - strandat 48.982 kb on - strandat 48.982 kb on - strandat 49.080 kb on + strandat 49.080 kb on + strandat 49.229 kb on - strandat 49.229 kb on - strandat 49.246 kb on + strandat 49.247 kb on - strandat 49.247 kb on - strandat 49.285 kb on + strandat 49.286 kb on - strandat 49.293 kb on + strandat 49.293 kb on + strandat 49.294 kb on - strandat 49.294 kb on - strandat 49.411 kb on - strandat 49.458 kb on + strand, within Psest_0047at 49.459 kb on - strand, within Psest_0047at 49.459 kb on - strand, within Psest_0047at 49.459 kb on - strand, within Psest_0047at 49.893 kb on + strand, within Psest_0047at 49.958 kb on + strand, within Psest_0047at 49.958 kb on + strand, within Psest_0047

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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47,727 - +0.3
47,758 + +0.8
47,759 - -0.2
47,792 + -0.4
47,792 + +0.1
47,916 + -0.8
47,916 + +1.1
47,917 - -0.6
47,917 - +0.6
47,917 - +0.9
47,917 - -1.2
48,030 - +1.6
48,046 - Psest_0045 0.13 +2.3
48,046 - Psest_0045 0.13 +0.7
48,046 - Psest_0045 0.13 +1.5
48,051 - Psest_0045 0.14 +1.0
48,056 + Psest_0045 0.15 -1.8
48,078 - Psest_0045 0.21 -0.5
48,112 + Psest_0045 0.30 +0.3
48,113 - Psest_0045 0.30 +3.1
48,114 + Psest_0045 0.31 -1.5
48,115 - Psest_0045 0.31 -0.5
48,116 + Psest_0045 0.31 +0.3
48,207 - Psest_0045 0.55 -1.9
48,281 - Psest_0045 0.75 +0.3
48,295 + Psest_0045 0.79 -0.4
48,335 - Psest_0045 0.89 -0.9
48,341 - -1.0
48,341 - -0.4
48,354 - +0.5
48,451 - +0.6
48,473 - -1.8
48,480 + +1.1
48,480 + +0.2
48,481 - +1.2
48,494 + -0.5
48,494 + -0.5
48,494 + -0.6
48,494 + +1.9
48,494 + +2.0
48,494 + -1.8
48,495 - -1.9
48,495 - +0.3
48,495 - +0.8
48,495 - +0.8
48,495 - +0.4
48,495 - -0.1
48,495 - -1.1
48,495 - +0.8
48,500 + +0.2
48,500 + +0.5
48,500 + +0.6
48,501 - -2.5
48,512 - -1.2
48,533 - -1.7
48,582 - -1.3
48,735 + Psest_0046 0.39 +1.5
48,736 - Psest_0046 0.39 -2.1
48,736 - Psest_0046 0.39 +0.3
48,795 - Psest_0046 0.52 -0.9
48,864 + Psest_0046 0.67 +0.2
48,865 - Psest_0046 0.68 -2.7
48,894 + Psest_0046 0.74 +0.7
48,894 + Psest_0046 0.74 -0.9
48,894 + Psest_0046 0.74 +0.8
48,894 + Psest_0046 0.74 -1.8
48,894 + Psest_0046 0.74 -0.9
48,894 + Psest_0046 0.74 +2.1
48,894 + Psest_0046 0.74 -1.5
48,895 - Psest_0046 0.74 +0.2
48,895 - Psest_0046 0.74 +1.6
48,895 - Psest_0046 0.74 +1.6
48,895 - Psest_0046 0.74 -1.7
48,895 - Psest_0046 0.74 +0.6
48,895 - Psest_0046 0.74 -0.0
48,895 - Psest_0046 0.74 -0.1
48,915 + Psest_0046 0.78 -0.4
48,960 + Psest_0046 0.88 -0.3
48,960 + Psest_0046 0.88 -0.7
48,960 + Psest_0046 0.88 -0.6
48,961 - Psest_0046 0.88 -1.9
48,971 + +1.8
48,971 + -0.7
48,971 + -1.2
48,971 + +0.9
48,971 + -2.3
48,971 + +0.3
48,971 + +1.1
48,972 - -1.6
48,972 - +0.4
48,972 - -1.2
48,981 + +0.1
48,982 - -0.4
48,982 - -4.1
48,982 - -0.1
49,080 + +0.0
49,080 + -0.2
49,229 - +0.4
49,229 - +1.1
49,246 + +0.3
49,247 - +0.1
49,247 - -1.7
49,285 + +2.6
49,286 - -0.7
49,293 + +2.4
49,293 + -0.4
49,294 - -1.4
49,294 - -0.5
49,411 - -0.9
49,458 + Psest_0047 0.13 +0.9
49,459 - Psest_0047 0.13 +0.4
49,459 - Psest_0047 0.13 -0.1
49,459 - Psest_0047 0.13 +1.8
49,893 + Psest_0047 0.49 +0.3
49,958 + Psest_0047 0.54 +1.0
49,958 + Psest_0047 0.54 -2.0

Or see this region's nucleotide sequence