Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3508

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3506 and Psest_3507 are separated by 98 nucleotidesPsest_3507 and Psest_3508 are separated by 3 nucleotidesPsest_3508 and Psest_3509 are separated by 123 nucleotides Psest_3506: Psest_3506 - Kef-type K+ transport system, predicted NAD-binding component, at 3,679,934 to 3,681,622 _3506 Psest_3507: Psest_3507 - FOG: EAL domain, at 3,681,721 to 3,682,533 _3507 Psest_3508: Psest_3508 - Putative intracellular protease/amidase, at 3,682,537 to 3,683,217 _3508 Psest_3509: Psest_3509 - Methyl-accepting chemotaxis protein, at 3,683,341 to 3,685,230 _3509 Position (kb) 3682 3683 3684Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3681.842 kb on - strand, within Psest_3507at 3681.881 kb on + strand, within Psest_3507at 3681.881 kb on + strand, within Psest_3507at 3681.881 kb on + strand, within Psest_3507at 3681.882 kb on - strand, within Psest_3507at 3681.882 kb on - strand, within Psest_3507at 3682.063 kb on + strand, within Psest_3507at 3682.531 kb on + strandat 3682.655 kb on + strand, within Psest_3508at 3682.772 kb on + strand, within Psest_3508at 3682.773 kb on - strand, within Psest_3508at 3682.773 kb on - strand, within Psest_3508at 3682.922 kb on + strand, within Psest_3508at 3682.971 kb on + strand, within Psest_3508at 3682.971 kb on + strand, within Psest_3508at 3683.092 kb on + strand, within Psest_3508at 3683.092 kb on + strand, within Psest_3508at 3683.113 kb on + strand, within Psest_3508at 3683.113 kb on + strand, within Psest_3508at 3683.113 kb on + strand, within Psest_3508at 3683.113 kb on + strand, within Psest_3508at 3683.114 kb on - strand, within Psest_3508at 3683.114 kb on - strand, within Psest_3508at 3683.114 kb on - strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.123 kb on + strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.124 kb on - strand, within Psest_3508at 3683.126 kb on + strand, within Psest_3508at 3683.324 kb on + strandat 3683.324 kb on + strandat 3683.325 kb on - strandat 3683.325 kb on - strandat 3683.728 kb on + strand, within Psest_3509at 3683.729 kb on - strand, within Psest_3509at 3683.729 kb on - strand, within Psest_3509at 3684.186 kb on + strand, within Psest_3509at 3684.186 kb on + strand, within Psest_3509at 3684.186 kb on + strand, within Psest_3509at 3684.186 kb on + strand, within Psest_3509at 3684.186 kb on + strand, within Psest_3509at 3684.186 kb on + strand, within Psest_3509at 3684.186 kb on + strand, within Psest_3509at 3684.187 kb on - strand, within Psest_3509at 3684.187 kb on - strand, within Psest_3509at 3684.187 kb on - strand, within Psest_3509at 3684.187 kb on - strand, within Psest_3509at 3684.187 kb on - strand, within Psest_3509at 3684.192 kb on + strand, within Psest_3509at 3684.192 kb on + strand, within Psest_3509at 3684.192 kb on + strand, within Psest_3509

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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3,681,842 - Psest_3507 0.15 -0.4
3,681,881 + Psest_3507 0.20 +0.4
3,681,881 + Psest_3507 0.20 +1.1
3,681,881 + Psest_3507 0.20 -0.6
3,681,882 - Psest_3507 0.20 -0.7
3,681,882 - Psest_3507 0.20 +2.3
3,682,063 + Psest_3507 0.42 -1.8
3,682,531 + +2.2
3,682,655 + Psest_3508 0.17 -0.9
3,682,772 + Psest_3508 0.35 +0.2
3,682,773 - Psest_3508 0.35 +1.3
3,682,773 - Psest_3508 0.35 +2.3
3,682,922 + Psest_3508 0.57 +1.3
3,682,971 + Psest_3508 0.64 +0.1
3,682,971 + Psest_3508 0.64 +0.4
3,683,092 + Psest_3508 0.81 -0.2
3,683,092 + Psest_3508 0.81 +0.8
3,683,113 + Psest_3508 0.85 +0.3
3,683,113 + Psest_3508 0.85 +1.3
3,683,113 + Psest_3508 0.85 -2.2
3,683,113 + Psest_3508 0.85 +0.1
3,683,114 - Psest_3508 0.85 -2.5
3,683,114 - Psest_3508 0.85 +1.0
3,683,114 - Psest_3508 0.85 -0.0
3,683,123 + Psest_3508 0.86 +1.6
3,683,123 + Psest_3508 0.86 -0.5
3,683,123 + Psest_3508 0.86 +1.3
3,683,123 + Psest_3508 0.86 +0.7
3,683,123 + Psest_3508 0.86 +1.4
3,683,123 + Psest_3508 0.86 +0.5
3,683,123 + Psest_3508 0.86 -0.2
3,683,123 + Psest_3508 0.86 -1.0
3,683,124 - Psest_3508 0.86 +0.8
3,683,124 - Psest_3508 0.86 +2.0
3,683,124 - Psest_3508 0.86 +2.0
3,683,124 - Psest_3508 0.86 +1.7
3,683,124 - Psest_3508 0.86 +1.2
3,683,124 - Psest_3508 0.86 -0.3
3,683,124 - Psest_3508 0.86 +1.1
3,683,124 - Psest_3508 0.86 +0.7
3,683,126 + Psest_3508 0.86 -1.4
3,683,324 + -1.3
3,683,324 + -1.6
3,683,325 - +0.0
3,683,325 - +1.3
3,683,728 + Psest_3509 0.20 +0.3
3,683,729 - Psest_3509 0.21 +2.1
3,683,729 - Psest_3509 0.21 -1.4
3,684,186 + Psest_3509 0.45 -4.1
3,684,186 + Psest_3509 0.45 +1.6
3,684,186 + Psest_3509 0.45 +2.3
3,684,186 + Psest_3509 0.45 +1.7
3,684,186 + Psest_3509 0.45 +1.2
3,684,186 + Psest_3509 0.45 +1.6
3,684,186 + Psest_3509 0.45 -1.0
3,684,187 - Psest_3509 0.45 -1.2
3,684,187 - Psest_3509 0.45 -1.8
3,684,187 - Psest_3509 0.45 -1.6
3,684,187 - Psest_3509 0.45 +0.2
3,684,187 - Psest_3509 0.45 +0.4
3,684,192 + Psest_3509 0.45 +0.7
3,684,192 + Psest_3509 0.45 +0.5
3,684,192 + Psest_3509 0.45 +1.1

Or see this region's nucleotide sequence