Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2991

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2990 and Psest_2991 are separated by 49 nucleotidesPsest_2991 and Psest_2992 are separated by 72 nucleotidesPsest_2992 and Psest_2993 are separated by 112 nucleotides Psest_2990: Psest_2990 - Threonine aldolase, at 3,181,193 to 3,182,218 _2990 Psest_2991: Psest_2991 - hypothetical protein, at 3,182,268 to 3,183,488 _2991 Psest_2992: Psest_2992 - Uncharacterized conserved protein, at 3,183,561 to 3,184,010 _2992 Psest_2993: Psest_2993 - hypothetical protein, at 3,184,123 to 3,184,527 _2993 Position (kb) 3182 3183 3184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3181.378 kb on - strand, within Psest_2990at 3181.378 kb on - strand, within Psest_2990at 3181.378 kb on - strand, within Psest_2990at 3181.496 kb on + strand, within Psest_2990at 3181.771 kb on - strand, within Psest_2990at 3181.798 kb on + strand, within Psest_2990at 3181.798 kb on + strand, within Psest_2990at 3181.799 kb on - strand, within Psest_2990at 3181.799 kb on - strand, within Psest_2990at 3181.799 kb on - strand, within Psest_2990at 3181.953 kb on + strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.954 kb on - strand, within Psest_2990at 3181.959 kb on + strand, within Psest_2990at 3181.959 kb on + strand, within Psest_2990at 3181.959 kb on + strand, within Psest_2990at 3181.959 kb on + strand, within Psest_2990at 3181.964 kb on - strand, within Psest_2990at 3181.964 kb on - strand, within Psest_2990at 3181.964 kb on - strand, within Psest_2990at 3181.986 kb on + strand, within Psest_2990at 3181.986 kb on + strand, within Psest_2990at 3181.986 kb on + strand, within Psest_2990at 3181.986 kb on + strand, within Psest_2990at 3181.986 kb on + strand, within Psest_2990at 3181.986 kb on + strand, within Psest_2990at 3181.986 kb on + strand, within Psest_2990at 3181.987 kb on - strand, within Psest_2990at 3181.987 kb on - strand, within Psest_2990at 3181.987 kb on - strand, within Psest_2990at 3182.035 kb on + strand, within Psest_2990at 3182.036 kb on - strand, within Psest_2990at 3182.036 kb on - strand, within Psest_2990at 3182.036 kb on - strand, within Psest_2990at 3182.036 kb on - strand, within Psest_2990at 3182.187 kb on - strandat 3182.201 kb on + strandat 3182.202 kb on - strandat 3182.202 kb on - strandat 3182.409 kb on - strand, within Psest_2991at 3182.590 kb on + strand, within Psest_2991at 3182.590 kb on + strand, within Psest_2991at 3182.590 kb on + strand, within Psest_2991at 3182.590 kb on + strand, within Psest_2991at 3182.590 kb on + strand, within Psest_2991at 3182.590 kb on + strand, within Psest_2991at 3182.590 kb on + strand, within Psest_2991at 3182.591 kb on - strand, within Psest_2991at 3182.722 kb on + strand, within Psest_2991at 3182.722 kb on + strand, within Psest_2991at 3182.723 kb on - strand, within Psest_2991at 3182.723 kb on - strand, within Psest_2991at 3182.894 kb on + strand, within Psest_2991at 3183.295 kb on + strand, within Psest_2991at 3183.296 kb on - strand, within Psest_2991at 3183.298 kb on + strand, within Psest_2991at 3183.526 kb on + strandat 3183.526 kb on + strandat 3183.526 kb on + strandat 3183.527 kb on - strandat 3183.527 kb on - strandat 3183.556 kb on + strandat 3183.556 kb on + strandat 3183.556 kb on + strandat 3183.557 kb on - strandat 3183.557 kb on - strandat 3183.557 kb on - strandat 3183.557 kb on - strandat 3183.557 kb on - strandat 3183.707 kb on + strand, within Psest_2992at 3183.872 kb on - strand, within Psest_2992at 3183.872 kb on - strand, within Psest_2992at 3183.872 kb on - strand, within Psest_2992at 3183.874 kb on + strand, within Psest_2992at 3183.874 kb on + strand, within Psest_2992at 3183.874 kb on + strand, within Psest_2992at 3183.874 kb on + strand, within Psest_2992at 3183.874 kb on + strand, within Psest_2992at 3183.874 kb on + strand, within Psest_2992at 3183.875 kb on - strand, within Psest_2992at 3183.875 kb on - strand, within Psest_2992at 3183.875 kb on - strand, within Psest_2992at 3184.016 kb on + strandat 3184.016 kb on + strandat 3184.016 kb on + strandat 3184.016 kb on + strandat 3184.017 kb on - strandat 3184.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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3,181,378 - Psest_2990 0.18 +0.0
3,181,378 - Psest_2990 0.18 -0.9
3,181,378 - Psest_2990 0.18 +0.9
3,181,496 + Psest_2990 0.30 +0.3
3,181,771 - Psest_2990 0.56 +0.5
3,181,798 + Psest_2990 0.59 +0.8
3,181,798 + Psest_2990 0.59 +1.0
3,181,799 - Psest_2990 0.59 -0.3
3,181,799 - Psest_2990 0.59 +0.6
3,181,799 - Psest_2990 0.59 -1.1
3,181,953 + Psest_2990 0.74 +2.2
3,181,954 - Psest_2990 0.74 +0.6
3,181,954 - Psest_2990 0.74 -0.6
3,181,954 - Psest_2990 0.74 +0.0
3,181,954 - Psest_2990 0.74 -0.1
3,181,954 - Psest_2990 0.74 -0.8
3,181,954 - Psest_2990 0.74 +0.9
3,181,954 - Psest_2990 0.74 +2.7
3,181,954 - Psest_2990 0.74 +0.8
3,181,954 - Psest_2990 0.74 +0.5
3,181,954 - Psest_2990 0.74 -0.9
3,181,954 - Psest_2990 0.74 -2.5
3,181,959 + Psest_2990 0.75 +0.3
3,181,959 + Psest_2990 0.75 -1.5
3,181,959 + Psest_2990 0.75 -0.9
3,181,959 + Psest_2990 0.75 +0.6
3,181,964 - Psest_2990 0.75 +0.3
3,181,964 - Psest_2990 0.75 -2.5
3,181,964 - Psest_2990 0.75 -2.6
3,181,986 + Psest_2990 0.77 +0.2
3,181,986 + Psest_2990 0.77 -0.4
3,181,986 + Psest_2990 0.77 -1.4
3,181,986 + Psest_2990 0.77 -3.4
3,181,986 + Psest_2990 0.77 -1.3
3,181,986 + Psest_2990 0.77 +0.2
3,181,986 + Psest_2990 0.77 +0.0
3,181,987 - Psest_2990 0.77 -2.3
3,181,987 - Psest_2990 0.77 -1.1
3,181,987 - Psest_2990 0.77 +1.2
3,182,035 + Psest_2990 0.82 +0.6
3,182,036 - Psest_2990 0.82 +0.6
3,182,036 - Psest_2990 0.82 -1.9
3,182,036 - Psest_2990 0.82 +2.1
3,182,036 - Psest_2990 0.82 -3.4
3,182,187 - -1.7
3,182,201 + -1.0
3,182,202 - +0.4
3,182,202 - -0.4
3,182,409 - Psest_2991 0.12 +1.7
3,182,590 + Psest_2991 0.26 +1.6
3,182,590 + Psest_2991 0.26 +0.6
3,182,590 + Psest_2991 0.26 +0.4
3,182,590 + Psest_2991 0.26 +2.7
3,182,590 + Psest_2991 0.26 +1.9
3,182,590 + Psest_2991 0.26 -0.3
3,182,590 + Psest_2991 0.26 +2.3
3,182,591 - Psest_2991 0.26 +0.6
3,182,722 + Psest_2991 0.37 +1.0
3,182,722 + Psest_2991 0.37 -1.5
3,182,723 - Psest_2991 0.37 -1.2
3,182,723 - Psest_2991 0.37 +1.4
3,182,894 + Psest_2991 0.51 +2.4
3,183,295 + Psest_2991 0.84 -0.8
3,183,296 - Psest_2991 0.84 +1.3
3,183,298 + Psest_2991 0.84 -1.3
3,183,526 + -0.9
3,183,526 + +1.2
3,183,526 + -0.2
3,183,527 - -3.2
3,183,527 - +1.7
3,183,556 + -0.4
3,183,556 + -2.2
3,183,556 + +1.7
3,183,557 - +0.2
3,183,557 - +1.2
3,183,557 - -2.1
3,183,557 - +1.1
3,183,557 - -1.3
3,183,707 + Psest_2992 0.32 +0.1
3,183,872 - Psest_2992 0.69 -0.1
3,183,872 - Psest_2992 0.69 +0.9
3,183,872 - Psest_2992 0.69 +1.3
3,183,874 + Psest_2992 0.70 -0.6
3,183,874 + Psest_2992 0.70 +0.9
3,183,874 + Psest_2992 0.70 +1.2
3,183,874 + Psest_2992 0.70 -0.8
3,183,874 + Psest_2992 0.70 +0.2
3,183,874 + Psest_2992 0.70 +1.2
3,183,875 - Psest_2992 0.70 -1.2
3,183,875 - Psest_2992 0.70 +0.4
3,183,875 - Psest_2992 0.70 +1.6
3,184,016 + -0.6
3,184,016 + +0.6
3,184,016 + +0.6
3,184,016 + +0.9
3,184,017 - +0.2
3,184,017 - -0.2

Or see this region's nucleotide sequence