Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2778

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2775 and Psest_2776 are separated by 9 nucleotidesPsest_2776 and Psest_2777 overlap by 4 nucleotidesPsest_2777 and Psest_2778 are separated by 158 nucleotidesPsest_2778 and Psest_2779 are separated by 98 nucleotides Psest_2775: Psest_2775 - Glycerol-3-phosphate dehydrogenase, at 2,972,252 to 2,973,787 _2775 Psest_2776: Psest_2776 - Uncharacterized protein conserved in bacteria, at 2,973,797 to 2,974,084 _2776 Psest_2777: Psest_2777 - hypothetical protein, at 2,974,081 to 2,974,308 _2777 Psest_2778: Psest_2778 - Parvulin-like peptidyl-prolyl isomerase, at 2,974,467 to 2,974,748 _2778 Psest_2779: Psest_2779 - Methyl-accepting chemotaxis protein, at 2,974,847 to 2,976,442 _2779 Position (kb) 2974 2975Strain fitness (log2 ratio) -1 0 1 2at 2973.612 kb on - strand, within Psest_2775at 2974.300 kb on - strandat 2974.447 kb on - strandat 2974.653 kb on - strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.657 kb on + strand, within Psest_2778at 2974.658 kb on - strand, within Psest_2778at 2975.467 kb on + strand, within Psest_2779at 2975.527 kb on + strand, within Psest_2779at 2975.527 kb on + strand, within Psest_2779at 2975.528 kb on - strand, within Psest_2779at 2975.528 kb on - strand, within Psest_2779at 2975.528 kb on - strand, within Psest_2779at 2975.724 kb on + strand, within Psest_2779at 2975.724 kb on + strand, within Psest_2779at 2975.725 kb on - strand, within Psest_2779

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,973,612 - Psest_2775 0.89 +1.1
2,974,300 - -0.7
2,974,447 - +0.1
2,974,653 - Psest_2778 0.66 +1.2
2,974,657 + Psest_2778 0.67 +1.9
2,974,657 + Psest_2778 0.67 +0.1
2,974,657 + Psest_2778 0.67 +1.0
2,974,657 + Psest_2778 0.67 -0.3
2,974,658 - Psest_2778 0.68 +0.1
2,975,467 + Psest_2779 0.39 +0.5
2,975,527 + Psest_2779 0.43 -1.6
2,975,527 + Psest_2779 0.43 -1.0
2,975,528 - Psest_2779 0.43 +0.3
2,975,528 - Psest_2779 0.43 +1.9
2,975,528 - Psest_2779 0.43 +0.0
2,975,724 + Psest_2779 0.55 -0.2
2,975,724 + Psest_2779 0.55 +0.5
2,975,725 - Psest_2779 0.55 +0.5

Or see this region's nucleotide sequence