Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2457

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2456 and Psest_2457 overlap by 4 nucleotidesPsest_2457 and Psest_2458 are separated by 34 nucleotides Psest_2456: Psest_2456 - Transglutaminase-like enzymes, putative cysteine proteases, at 2,624,649 to 2,626,649 _2456 Psest_2457: Psest_2457 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 2,626,646 to 2,627,608 _2457 Psest_2458: Psest_2458 - MoxR-like ATPases, at 2,627,643 to 2,628,560 _2458 Position (kb) 2626 2627 2628Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2625.697 kb on + strand, within Psest_2456at 2625.697 kb on + strand, within Psest_2456at 2625.833 kb on - strand, within Psest_2456at 2625.890 kb on - strand, within Psest_2456at 2625.890 kb on - strand, within Psest_2456at 2625.890 kb on - strand, within Psest_2456at 2625.890 kb on - strand, within Psest_2456at 2625.890 kb on - strand, within Psest_2456at 2625.890 kb on - strand, within Psest_2456at 2625.943 kb on + strand, within Psest_2456at 2625.944 kb on - strand, within Psest_2456at 2625.944 kb on - strand, within Psest_2456at 2626.254 kb on - strand, within Psest_2456at 2626.254 kb on - strand, within Psest_2456at 2626.254 kb on - strand, within Psest_2456at 2626.256 kb on - strand, within Psest_2456at 2626.256 kb on - strand, within Psest_2456at 2626.288 kb on + strand, within Psest_2456at 2626.289 kb on - strand, within Psest_2456at 2626.289 kb on - strand, within Psest_2456at 2626.289 kb on - strand, within Psest_2456at 2626.433 kb on - strand, within Psest_2456at 2626.433 kb on - strand, within Psest_2456at 2626.912 kb on - strand, within Psest_2457at 2626.972 kb on - strand, within Psest_2457at 2627.067 kb on + strand, within Psest_2457at 2627.271 kb on + strand, within Psest_2457at 2627.272 kb on - strand, within Psest_2457at 2627.400 kb on + strand, within Psest_2457at 2627.401 kb on - strand, within Psest_2457at 2627.448 kb on + strand, within Psest_2457at 2627.449 kb on - strand, within Psest_2457at 2627.600 kb on + strandat 2627.600 kb on + strandat 2627.601 kb on - strandat 2627.601 kb on - strandat 2627.609 kb on - strandat 2627.899 kb on + strand, within Psest_2458at 2627.899 kb on + strand, within Psest_2458at 2627.899 kb on + strand, within Psest_2458at 2627.900 kb on - strand, within Psest_2458at 2628.408 kb on - strand, within Psest_2458at 2628.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,625,697 + Psest_2456 0.52 +2.0
2,625,697 + Psest_2456 0.52 +1.0
2,625,833 - Psest_2456 0.59 +0.6
2,625,890 - Psest_2456 0.62 +0.2
2,625,890 - Psest_2456 0.62 +2.0
2,625,890 - Psest_2456 0.62 +0.1
2,625,890 - Psest_2456 0.62 -3.8
2,625,890 - Psest_2456 0.62 +2.7
2,625,890 - Psest_2456 0.62 +0.0
2,625,943 + Psest_2456 0.65 +0.8
2,625,944 - Psest_2456 0.65 +1.1
2,625,944 - Psest_2456 0.65 -1.7
2,626,254 - Psest_2456 0.80 +0.3
2,626,254 - Psest_2456 0.80 +0.4
2,626,254 - Psest_2456 0.80 +1.3
2,626,256 - Psest_2456 0.80 +0.1
2,626,256 - Psest_2456 0.80 -0.1
2,626,288 + Psest_2456 0.82 -0.2
2,626,289 - Psest_2456 0.82 +0.4
2,626,289 - Psest_2456 0.82 -0.0
2,626,289 - Psest_2456 0.82 +1.4
2,626,433 - Psest_2456 0.89 -2.3
2,626,433 - Psest_2456 0.89 +0.9
2,626,912 - Psest_2457 0.28 +0.9
2,626,972 - Psest_2457 0.34 +1.4
2,627,067 + Psest_2457 0.44 +1.3
2,627,271 + Psest_2457 0.65 +2.4
2,627,272 - Psest_2457 0.65 -1.0
2,627,400 + Psest_2457 0.78 -0.2
2,627,401 - Psest_2457 0.78 -0.7
2,627,448 + Psest_2457 0.83 +2.1
2,627,449 - Psest_2457 0.83 +0.8
2,627,600 + +0.8
2,627,600 + -1.3
2,627,601 - +0.1
2,627,601 - +0.7
2,627,609 - -0.2
2,627,899 + Psest_2458 0.28 -0.5
2,627,899 + Psest_2458 0.28 +0.3
2,627,899 + Psest_2458 0.28 -0.0
2,627,900 - Psest_2458 0.28 -0.3
2,628,408 - Psest_2458 0.83 +1.4
2,628,591 + -2.2

Or see this region's nucleotide sequence