Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2216

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2214 and Psest_2215 are separated by 51 nucleotidesPsest_2215 and Psest_2216 are separated by 259 nucleotidesPsest_2216 and Psest_2217 are separated by 9 nucleotides Psest_2214: Psest_2214 - hypothetical protein, at 2,364,847 to 2,365,149 _2214 Psest_2215: Psest_2215 - hypothetical protein, at 2,365,201 to 2,365,485 _2215 Psest_2216: Psest_2216 - Acyl carrier protein, at 2,365,745 to 2,365,996 _2216 Psest_2217: Psest_2217 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes, at 2,366,006 to 2,367,154 _2217 Position (kb) 2365 2366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2365.647 kb on + strandat 2365.647 kb on + strandat 2365.648 kb on - strandat 2365.747 kb on - strandat 2365.774 kb on - strand, within Psest_2216at 2365.809 kb on + strand, within Psest_2216at 2365.856 kb on + strand, within Psest_2216at 2365.857 kb on - strand, within Psest_2216at 2365.860 kb on + strand, within Psest_2216at 2365.928 kb on + strand, within Psest_2216at 2365.928 kb on + strand, within Psest_2216at 2366.103 kb on - strandat 2366.103 kb on - strandat 2366.174 kb on + strand, within Psest_2217at 2366.174 kb on + strand, within Psest_2217at 2366.174 kb on + strand, within Psest_2217at 2366.175 kb on - strand, within Psest_2217at 2366.197 kb on - strand, within Psest_2217at 2366.451 kb on + strand, within Psest_2217at 2366.507 kb on + strand, within Psest_2217at 2366.508 kb on - strand, within Psest_2217at 2366.508 kb on - strand, within Psest_2217at 2366.550 kb on + strand, within Psest_2217at 2366.550 kb on + strand, within Psest_2217at 2366.601 kb on + strand, within Psest_2217at 2366.601 kb on + strand, within Psest_2217at 2366.602 kb on - strand, within Psest_2217at 2366.602 kb on - strand, within Psest_2217

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
2,365,647 + -1.2
2,365,647 + -1.3
2,365,648 - -0.4
2,365,747 - +2.4
2,365,774 - Psest_2216 0.12 +0.7
2,365,809 + Psest_2216 0.25 -3.3
2,365,856 + Psest_2216 0.44 +2.1
2,365,857 - Psest_2216 0.44 +2.1
2,365,860 + Psest_2216 0.46 +1.3
2,365,928 + Psest_2216 0.73 -1.4
2,365,928 + Psest_2216 0.73 +0.7
2,366,103 - -0.7
2,366,103 - -0.5
2,366,174 + Psest_2217 0.15 -1.5
2,366,174 + Psest_2217 0.15 +1.6
2,366,174 + Psest_2217 0.15 -0.9
2,366,175 - Psest_2217 0.15 -0.7
2,366,197 - Psest_2217 0.17 -2.5
2,366,451 + Psest_2217 0.39 +1.9
2,366,507 + Psest_2217 0.44 +0.7
2,366,508 - Psest_2217 0.44 +1.4
2,366,508 - Psest_2217 0.44 -0.3
2,366,550 + Psest_2217 0.47 +2.4
2,366,550 + Psest_2217 0.47 -0.7
2,366,601 + Psest_2217 0.52 -0.1
2,366,601 + Psest_2217 0.52 -2.1
2,366,602 - Psest_2217 0.52 -0.6
2,366,602 - Psest_2217 0.52 +1.2

Or see this region's nucleotide sequence