Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2176

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2174 and Psest_2175 are separated by 236 nucleotidesPsest_2175 and Psest_2176 are separated by 102 nucleotidesPsest_2176 and Psest_2177 are separated by 11 nucleotidesPsest_2177 and Psest_2178 are separated by 270 nucleotidesPsest_2178 and Psest_2179 are separated by 30 nucleotides Psest_2174: Psest_2174 - Small-conductance mechanosensitive channel, at 2,331,173 to 2,332,252 _2174 Psest_2175: Psest_2175 - Uncharacterized protein conserved in bacteria, at 2,332,489 to 2,333,019 _2175 Psest_2176: Psest_2176 - Predicted membrane protein, at 2,333,122 to 2,333,406 _2176 Psest_2177: Psest_2177 - Protein of unknown function (DUF1652)., at 2,333,418 to 2,333,693 _2177 Psest_2178: Psest_2178 - hypothetical protein, at 2,333,964 to 2,334,260 _2178 Psest_2179: Psest_2179 - DNA ligase D, at 2,334,291 to 2,336,855 _2179 Position (kb) 2333 2334Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.454 kb on - strandat 2332.616 kb on - strand, within Psest_2175at 2332.616 kb on - strand, within Psest_2175at 2332.814 kb on - strand, within Psest_2175at 2332.814 kb on - strand, within Psest_2175at 2332.817 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.844 kb on - strand, within Psest_2175at 2332.844 kb on - strand, within Psest_2175at 2332.844 kb on - strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.899 kb on - strand, within Psest_2175at 2332.975 kb on + strandat 2332.975 kb on + strandat 2333.211 kb on + strand, within Psest_2176at 2333.211 kb on + strand, within Psest_2176at 2333.211 kb on + strand, within Psest_2176at 2333.211 kb on + strand, within Psest_2176at 2333.219 kb on + strand, within Psest_2176at 2333.220 kb on - strand, within Psest_2176at 2333.220 kb on - strand, within Psest_2176at 2333.269 kb on + strand, within Psest_2176at 2333.269 kb on + strand, within Psest_2176at 2333.269 kb on + strand, within Psest_2176at 2333.270 kb on - strand, within Psest_2176at 2333.353 kb on + strand, within Psest_2176at 2333.353 kb on + strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.537 kb on - strand, within Psest_2177at 2333.644 kb on + strand, within Psest_2177at 2333.644 kb on + strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.687 kb on + strandat 2333.693 kb on + strandat 2333.693 kb on + strandat 2333.693 kb on + strandat 2333.694 kb on - strandat 2333.694 kb on - strandat 2333.709 kb on - strandat 2333.776 kb on - strandat 2333.795 kb on + strandat 2333.795 kb on + strandat 2333.795 kb on + strandat 2333.796 kb on - strandat 2333.807 kb on + strandat 2333.808 kb on - strandat 2333.808 kb on - strandat 2333.843 kb on + strandat 2333.844 kb on - strandat 2333.916 kb on - strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.941 kb on + strandat 2333.941 kb on + strandat 2333.942 kb on - strandat 2333.942 kb on - strandat 2333.942 kb on - strandat 2333.944 kb on + strandat 2333.944 kb on + strandat 2333.944 kb on + strandat 2333.944 kb on + strandat 2333.945 kb on - strandat 2334.259 kb on - strandat 2334.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,332,269 + -0.5
2,332,269 + +2.1
2,332,269 + +0.3
2,332,269 + -1.4
2,332,269 + +1.6
2,332,269 + -0.7
2,332,269 + -1.7
2,332,269 + -1.0
2,332,269 + +1.9
2,332,269 + -0.2
2,332,269 + -1.1
2,332,269 + +0.7
2,332,269 + +0.5
2,332,270 - -0.7
2,332,270 - -1.8
2,332,270 - -2.9
2,332,270 - +1.3
2,332,270 - +0.6
2,332,270 - +0.9
2,332,270 - +0.3
2,332,270 - -0.1
2,332,454 - +1.5
2,332,616 - Psest_2175 0.24 -0.0
2,332,616 - Psest_2175 0.24 +0.8
2,332,814 - Psest_2175 0.61 +0.7
2,332,814 - Psest_2175 0.61 -2.3
2,332,817 + Psest_2175 0.62 +0.9
2,332,843 + Psest_2175 0.67 +0.6
2,332,843 + Psest_2175 0.67 -0.1
2,332,843 + Psest_2175 0.67 +0.7
2,332,843 + Psest_2175 0.67 -2.0
2,332,843 + Psest_2175 0.67 -1.1
2,332,844 - Psest_2175 0.67 +0.0
2,332,844 - Psest_2175 0.67 +1.9
2,332,844 - Psest_2175 0.67 +0.2
2,332,898 + Psest_2175 0.77 +0.6
2,332,898 + Psest_2175 0.77 +0.9
2,332,898 + Psest_2175 0.77 +1.6
2,332,898 + Psest_2175 0.77 +0.7
2,332,898 + Psest_2175 0.77 +1.8
2,332,898 + Psest_2175 0.77 -0.5
2,332,899 - Psest_2175 0.77 +0.0
2,332,975 + +0.2
2,332,975 + -0.1
2,333,211 + Psest_2176 0.31 -2.2
2,333,211 + Psest_2176 0.31 +0.7
2,333,211 + Psest_2176 0.31 +0.8
2,333,211 + Psest_2176 0.31 -2.5
2,333,219 + Psest_2176 0.34 +0.9
2,333,220 - Psest_2176 0.34 -0.1
2,333,220 - Psest_2176 0.34 +2.1
2,333,269 + Psest_2176 0.52 -0.7
2,333,269 + Psest_2176 0.52 +0.1
2,333,269 + Psest_2176 0.52 +1.0
2,333,270 - Psest_2176 0.52 +1.6
2,333,353 + Psest_2176 0.81 -0.8
2,333,353 + Psest_2176 0.81 +0.5
2,333,354 - Psest_2176 0.81 +1.8
2,333,354 - Psest_2176 0.81 -0.4
2,333,354 - Psest_2176 0.81 +2.0
2,333,354 - Psest_2176 0.81 +0.5
2,333,354 - Psest_2176 0.81 +2.1
2,333,354 - Psest_2176 0.81 -2.4
2,333,537 - Psest_2177 0.43 +0.0
2,333,644 + Psest_2177 0.82 +0.9
2,333,644 + Psest_2177 0.82 +1.6
2,333,645 - Psest_2177 0.82 +0.2
2,333,645 - Psest_2177 0.82 +1.3
2,333,645 - Psest_2177 0.82 -2.2
2,333,645 - Psest_2177 0.82 -2.5
2,333,645 - Psest_2177 0.82 -0.8
2,333,645 - Psest_2177 0.82 -2.0
2,333,687 + +0.3
2,333,693 + +1.7
2,333,693 + +1.9
2,333,693 + -1.1
2,333,694 - -0.1
2,333,694 - -0.8
2,333,709 - -1.2
2,333,776 - +1.6
2,333,795 + +0.9
2,333,795 + +0.4
2,333,795 + -0.2
2,333,796 - -2.1
2,333,807 + +0.5
2,333,808 - +1.3
2,333,808 - -1.2
2,333,843 + +0.3
2,333,844 - -1.1
2,333,916 - -0.1
2,333,937 + +0.3
2,333,937 + -4.0
2,333,937 + -2.0
2,333,937 + -0.2
2,333,937 + -2.3
2,333,937 + +0.2
2,333,937 + +0.3
2,333,938 - +1.1
2,333,938 - -0.8
2,333,938 - +1.1
2,333,938 - -0.4
2,333,938 - +0.8
2,333,938 - +3.1
2,333,938 - -0.0
2,333,938 - -0.7
2,333,938 - +2.3
2,333,938 - -0.8
2,333,941 + -0.0
2,333,941 + +2.5
2,333,942 - -2.9
2,333,942 - +0.1
2,333,942 - -0.5
2,333,944 + -0.5
2,333,944 + +0.6
2,333,944 + +1.7
2,333,944 + -0.4
2,333,945 - -0.1
2,334,259 - +1.2
2,334,307 - -1.4

Or see this region's nucleotide sequence