Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1660

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1658 and Psest_1659 overlap by 1 nucleotidesPsest_1659 and Psest_1660 are separated by 15 nucleotidesPsest_1660 and Psest_1661 are separated by 1 nucleotides Psest_1658: Psest_1658 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 1,768,214 to 1,768,882 _1658 Psest_1659: Psest_1659 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit, at 1,768,882 to 1,769,490 _1659 Psest_1660: Psest_1660 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, at 1,769,506 to 1,770,729 _1660 Psest_1661: Psest_1661 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 1,770,731 to 1,771,783 _1661 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -1 0 1 2 3at 1768.716 kb on + strand, within Psest_1658at 1768.891 kb on + strandat 1769.059 kb on + strand, within Psest_1659at 1769.060 kb on - strand, within Psest_1659at 1769.065 kb on + strand, within Psest_1659at 1769.140 kb on + strand, within Psest_1659at 1769.140 kb on + strand, within Psest_1659at 1769.194 kb on + strand, within Psest_1659at 1769.209 kb on + strand, within Psest_1659at 1769.293 kb on + strand, within Psest_1659at 1769.317 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.480 kb on + strandat 1769.488 kb on + strandat 1770.064 kb on + strand, within Psest_1660at 1770.100 kb on + strand, within Psest_1660at 1770.244 kb on + strand, within Psest_1660at 1770.457 kb on + strand, within Psest_1660at 1770.469 kb on + strand, within Psest_1660at 1770.469 kb on + strand, within Psest_1660at 1770.589 kb on + strand, within Psest_1660at 1770.628 kb on + strandat 1770.628 kb on + strandat 1770.628 kb on + strandat 1770.770 kb on + strandat 1770.770 kb on + strandat 1770.872 kb on + strand, within Psest_1661at 1770.872 kb on + strand, within Psest_1661at 1770.872 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1771.647 kb on + strand, within Psest_1661

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,768,716 + Psest_1658 0.75 -0.0
1,768,891 + +0.6
1,769,059 + Psest_1659 0.29 +2.0
1,769,060 - Psest_1659 0.29 -0.4
1,769,065 + Psest_1659 0.30 +2.0
1,769,140 + Psest_1659 0.42 +0.4
1,769,140 + Psest_1659 0.42 +0.6
1,769,194 + Psest_1659 0.51 -0.4
1,769,209 + Psest_1659 0.54 +1.0
1,769,293 + Psest_1659 0.67 +1.4
1,769,317 + Psest_1659 0.71 -0.0
1,769,389 + Psest_1659 0.83 +1.0
1,769,389 + Psest_1659 0.83 -0.0
1,769,389 + Psest_1659 0.83 +1.4
1,769,389 + Psest_1659 0.83 -1.5
1,769,389 + Psest_1659 0.83 -1.2
1,769,480 + +0.4
1,769,488 + -0.0
1,770,064 + Psest_1660 0.46 +2.0
1,770,100 + Psest_1660 0.49 +0.4
1,770,244 + Psest_1660 0.60 +1.4
1,770,457 + Psest_1660 0.78 +1.8
1,770,469 + Psest_1660 0.79 +0.4
1,770,469 + Psest_1660 0.79 +1.0
1,770,589 + Psest_1660 0.88 +0.4
1,770,628 + +2.0
1,770,628 + +1.0
1,770,628 + -0.8
1,770,770 + +0.6
1,770,770 + +0.3
1,770,872 + Psest_1661 0.13 +2.0
1,770,872 + Psest_1661 0.13 +1.6
1,770,872 + Psest_1661 0.13 +1.0
1,770,884 + Psest_1661 0.15 -0.0
1,770,884 + Psest_1661 0.15 +1.4
1,770,884 + Psest_1661 0.15 +1.0
1,770,884 + Psest_1661 0.15 +2.0
1,770,884 + Psest_1661 0.15 -0.4
1,770,884 + Psest_1661 0.15 +0.7
1,770,884 + Psest_1661 0.15 +3.0
1,771,647 + Psest_1661 0.87 +0.4

Or see this region's nucleotide sequence