Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1419

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1418 and Psest_1419 are separated by 96 nucleotidesPsest_1419 and Psest_1420 are separated by 113 nucleotidesPsest_1420 and Psest_1421 overlap by 4 nucleotides Psest_1418: Psest_1418 - Transposase and inactivated derivatives, at 1,526,614 to 1,527,984 _1418 Psest_1419: Psest_1419 - Transcriptional regulator, at 1,528,081 to 1,528,977 _1419 Psest_1420: Psest_1420 - Lactoylglutathione lyase and related lyases, at 1,529,091 to 1,529,519 _1420 Psest_1421: Psest_1421 - Glutathione S-transferase, at 1,529,516 to 1,530,103 _1421 Position (kb) 1528 1529Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1528.083 kb on - strandat 1528.223 kb on - strand, within Psest_1419at 1528.259 kb on + strand, within Psest_1419at 1528.260 kb on - strand, within Psest_1419at 1528.260 kb on - strand, within Psest_1419at 1528.662 kb on - strand, within Psest_1419at 1528.662 kb on - strand, within Psest_1419at 1528.662 kb on - strand, within Psest_1419at 1528.840 kb on + strand, within Psest_1419at 1528.841 kb on - strand, within Psest_1419at 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.008 kb on + strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.009 kb on - strandat 1529.031 kb on + strandat 1529.032 kb on - strandat 1529.525 kb on + strandat 1529.525 kb on + strandat 1529.525 kb on + strandat 1529.526 kb on - strandat 1529.526 kb on - strandat 1529.552 kb on + strandat 1529.552 kb on + strandat 1529.553 kb on - strandat 1529.553 kb on - strandat 1529.553 kb on - strandat 1529.553 kb on - strandat 1529.695 kb on + strand, within Psest_1421at 1529.726 kb on + strand, within Psest_1421at 1529.727 kb on - strand, within Psest_1421

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,528,083 - +0.8
1,528,223 - Psest_1419 0.16 +0.2
1,528,259 + Psest_1419 0.20 +0.7
1,528,260 - Psest_1419 0.20 +2.1
1,528,260 - Psest_1419 0.20 +2.8
1,528,662 - Psest_1419 0.65 -1.9
1,528,662 - Psest_1419 0.65 +0.7
1,528,662 - Psest_1419 0.65 -0.4
1,528,840 + Psest_1419 0.85 +0.3
1,528,841 - Psest_1419 0.85 +0.7
1,529,008 + -1.1
1,529,008 + -1.1
1,529,008 + -2.7
1,529,008 + -0.7
1,529,008 + +0.6
1,529,008 + -1.1
1,529,008 + -0.2
1,529,008 + +1.5
1,529,008 + -0.3
1,529,008 + -2.1
1,529,008 + -0.7
1,529,008 + -0.1
1,529,008 + -2.2
1,529,008 + +0.1
1,529,008 + +0.0
1,529,008 + -1.9
1,529,008 + -1.0
1,529,008 + +3.4
1,529,008 + -0.2
1,529,008 + -0.9
1,529,008 + +1.2
1,529,008 + -0.6
1,529,008 + -0.2
1,529,008 + +0.4
1,529,008 + +1.0
1,529,009 - +0.8
1,529,009 - -0.3
1,529,009 - +0.2
1,529,009 - +0.4
1,529,009 - -2.1
1,529,009 - +0.5
1,529,009 - +1.0
1,529,009 - +0.3
1,529,009 - -1.6
1,529,009 - +1.6
1,529,009 - -0.0
1,529,009 - -1.8
1,529,009 - -0.3
1,529,009 - +0.4
1,529,031 + -1.6
1,529,032 - +0.9
1,529,525 + -1.1
1,529,525 + -0.4
1,529,525 + -1.1
1,529,526 - +0.8
1,529,526 - -1.0
1,529,552 + -2.4
1,529,552 + +0.7
1,529,553 - +2.0
1,529,553 - -1.8
1,529,553 - -0.4
1,529,553 - +1.2
1,529,695 + Psest_1421 0.30 +0.2
1,529,726 + Psest_1421 0.36 -1.1
1,529,727 - Psest_1421 0.36 -1.3

Or see this region's nucleotide sequence