Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1283

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1281 and Psest_1282 are separated by 83 nucleotidesPsest_1282 and Psest_1283 are separated by 23 nucleotidesPsest_1283 and Psest_1284 are separated by 103 nucleotides Psest_1281: Psest_1281 - Small-conductance mechanosensitive channel, at 1,385,350 to 1,386,669 _1281 Psest_1282: Psest_1282 - Amidases related to nicotinamidase, at 1,386,753 to 1,387,295 _1282 Psest_1283: Psest_1283 - Membrane proteins related to metalloendopeptidases, at 1,387,319 to 1,388,143 _1283 Psest_1284: Psest_1284 - exodeoxyribonuclease VII, large subunit, at 1,388,247 to 1,389,623 _1284 Position (kb) 1387 1388 1389Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1386.531 kb on - strand, within Psest_1281at 1386.674 kb on + strandat 1386.674 kb on + strandat 1386.675 kb on - strandat 1386.675 kb on - strandat 1386.675 kb on - strandat 1387.139 kb on - strand, within Psest_1282at 1387.179 kb on + strand, within Psest_1282at 1387.180 kb on - strand, within Psest_1282at 1387.330 kb on - strandat 1387.330 kb on - strandat 1387.548 kb on + strand, within Psest_1283at 1387.548 kb on + strand, within Psest_1283at 1387.548 kb on + strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.549 kb on - strand, within Psest_1283at 1387.563 kb on - strand, within Psest_1283at 1387.746 kb on + strand, within Psest_1283at 1388.059 kb on + strand, within Psest_1283at 1388.249 kb on - strandat 1388.457 kb on + strand, within Psest_1284at 1388.458 kb on - strand, within Psest_1284at 1388.458 kb on - strand, within Psest_1284at 1389.033 kb on + strand, within Psest_1284

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,386,531 - Psest_1281 0.89 -2.4
1,386,674 + -0.5
1,386,674 + -0.2
1,386,675 - +2.3
1,386,675 - +0.2
1,386,675 - +3.9
1,387,139 - Psest_1282 0.71 -0.1
1,387,179 + Psest_1282 0.78 +0.5
1,387,180 - Psest_1282 0.79 -1.2
1,387,330 - -0.7
1,387,330 - +2.1
1,387,548 + Psest_1283 0.28 -1.5
1,387,548 + Psest_1283 0.28 +1.6
1,387,548 + Psest_1283 0.28 +2.3
1,387,549 - Psest_1283 0.28 -0.7
1,387,549 - Psest_1283 0.28 -1.4
1,387,549 - Psest_1283 0.28 +2.1
1,387,549 - Psest_1283 0.28 +1.5
1,387,549 - Psest_1283 0.28 +0.2
1,387,563 - Psest_1283 0.30 +1.5
1,387,746 + Psest_1283 0.52 +2.3
1,388,059 + Psest_1283 0.90 +1.6
1,388,249 - -0.3
1,388,457 + Psest_1284 0.15 -2.0
1,388,458 - Psest_1284 0.15 +1.9
1,388,458 - Psest_1284 0.15 +0.2
1,389,033 + Psest_1284 0.57 +0.9

Or see this region's nucleotide sequence