Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1281 and Psest_1282 are separated by 83 nucleotides Psest_1282 and Psest_1283 are separated by 23 nucleotides Psest_1283 and Psest_1284 are separated by 103 nucleotides
Psest_1281: Psest_1281 - Small-conductance mechanosensitive channel, at 1,385,350 to 1,386,669
_1281
Psest_1282: Psest_1282 - Amidases related to nicotinamidase, at 1,386,753 to 1,387,295
_1282
Psest_1283: Psest_1283 - Membrane proteins related to metalloendopeptidases, at 1,387,319 to 1,388,143
_1283
Psest_1284: Psest_1284 - exodeoxyribonuclease VII, large subunit, at 1,388,247 to 1,389,623
_1284
Position (kb)
1387
1388
1389 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1386.531 kb on - strand, within Psest_1281 at 1386.674 kb on + strand at 1386.674 kb on + strand at 1386.675 kb on - strand at 1386.675 kb on - strand at 1386.675 kb on - strand at 1387.139 kb on - strand, within Psest_1282 at 1387.179 kb on + strand, within Psest_1282 at 1387.180 kb on - strand, within Psest_1282 at 1387.330 kb on - strand at 1387.330 kb on - strand at 1387.548 kb on + strand, within Psest_1283 at 1387.548 kb on + strand, within Psest_1283 at 1387.548 kb on + strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.563 kb on - strand, within Psest_1283 at 1387.746 kb on + strand, within Psest_1283 at 1388.059 kb on + strand, within Psest_1283 at 1388.249 kb on - strand at 1388.457 kb on + strand, within Psest_1284 at 1388.458 kb on - strand, within Psest_1284 at 1388.458 kb on - strand, within Psest_1284 at 1389.033 kb on + strand, within Psest_1284
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 1,386,531 - Psest_1281 0.89 -2.4 1,386,674 + -0.5 1,386,674 + -0.2 1,386,675 - +2.3 1,386,675 - +0.2 1,386,675 - +3.9 1,387,139 - Psest_1282 0.71 -0.1 1,387,179 + Psest_1282 0.78 +0.5 1,387,180 - Psest_1282 0.79 -1.2 1,387,330 - -0.7 1,387,330 - +2.1 1,387,548 + Psest_1283 0.28 -1.5 1,387,548 + Psest_1283 0.28 +1.6 1,387,548 + Psest_1283 0.28 +2.3 1,387,549 - Psest_1283 0.28 -0.7 1,387,549 - Psest_1283 0.28 -1.4 1,387,549 - Psest_1283 0.28 +2.1 1,387,549 - Psest_1283 0.28 +1.5 1,387,549 - Psest_1283 0.28 +0.2 1,387,563 - Psest_1283 0.30 +1.5 1,387,746 + Psest_1283 0.52 +2.3 1,388,059 + Psest_1283 0.90 +1.6 1,388,249 - -0.3 1,388,457 + Psest_1284 0.15 -2.0 1,388,458 - Psest_1284 0.15 +1.9 1,388,458 - Psest_1284 0.15 +0.2 1,389,033 + Psest_1284 0.57 +0.9
Or see this region's nucleotide sequence