Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4364

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4362 and Psest_4363 are separated by 9 nucleotidesPsest_4363 and Psest_4364 are separated by 19 nucleotidesPsest_4364 and Psest_4365 overlap by 1 nucleotides Psest_4362: Psest_4362 - ParB-like partition proteins, at 4,560,773 to 4,561,645 _4362 Psest_4363: Psest_4363 - ATPases involved in chromosome partitioning, at 4,561,655 to 4,562,443 _4363 Psest_4364: Psest_4364 - 16S rRNA (guanine(527)-N(7))-methyltransferase GidB, at 4,562,463 to 4,563,110 _4364 Psest_4365: Psest_4365 - glucose-inhibited division protein A, at 4,563,110 to 4,565,002 _4365 Position (kb) 4562 4563 4564Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4561.501 kb on - strand, within Psest_4362at 4561.622 kb on + strandat 4561.622 kb on + strandat 4561.623 kb on - strandat 4561.649 kb on + strandat 4561.650 kb on - strandat 4561.657 kb on - strandat 4561.720 kb on - strandat 4561.765 kb on + strand, within Psest_4363at 4561.808 kb on + strand, within Psest_4363at 4561.808 kb on + strand, within Psest_4363at 4561.808 kb on + strand, within Psest_4363at 4561.818 kb on + strand, within Psest_4363at 4561.818 kb on + strand, within Psest_4363at 4561.818 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.887 kb on + strand, within Psest_4363at 4561.888 kb on - strand, within Psest_4363at 4561.888 kb on - strand, within Psest_4363at 4561.888 kb on - strand, within Psest_4363at 4561.888 kb on - strand, within Psest_4363at 4561.888 kb on - strand, within Psest_4363at 4561.888 kb on - strand, within Psest_4363at 4561.986 kb on + strand, within Psest_4363at 4561.986 kb on + strand, within Psest_4363at 4561.986 kb on + strand, within Psest_4363at 4561.986 kb on + strand, within Psest_4363at 4561.987 kb on - strand, within Psest_4363at 4562.030 kb on + strand, within Psest_4363at 4562.030 kb on + strand, within Psest_4363at 4562.030 kb on + strand, within Psest_4363at 4562.031 kb on - strand, within Psest_4363at 4562.082 kb on + strand, within Psest_4363at 4562.082 kb on + strand, within Psest_4363at 4562.082 kb on + strand, within Psest_4363at 4562.082 kb on + strand, within Psest_4363at 4562.082 kb on + strand, within Psest_4363at 4562.082 kb on + strand, within Psest_4363at 4562.083 kb on - strand, within Psest_4363at 4562.083 kb on - strand, within Psest_4363at 4562.083 kb on - strand, within Psest_4363at 4562.083 kb on - strand, within Psest_4363at 4562.088 kb on + strand, within Psest_4363at 4562.089 kb on - strand, within Psest_4363at 4562.089 kb on - strand, within Psest_4363at 4562.089 kb on - strand, within Psest_4363at 4562.089 kb on - strand, within Psest_4363at 4562.262 kb on + strand, within Psest_4363at 4562.262 kb on + strand, within Psest_4363at 4562.262 kb on + strand, within Psest_4363at 4562.272 kb on - strand, within Psest_4363at 4562.482 kb on - strandat 4562.523 kb on + strandat 4562.523 kb on + strandat 4562.524 kb on - strandat 4562.524 kb on - strandat 4562.691 kb on + strand, within Psest_4364at 4562.704 kb on + strand, within Psest_4364at 4562.841 kb on + strand, within Psest_4364at 4562.911 kb on - strand, within Psest_4364at 4562.977 kb on + strand, within Psest_4364at 4562.977 kb on + strand, within Psest_4364at 4562.978 kb on - strand, within Psest_4364at 4562.978 kb on - strand, within Psest_4364at 4562.978 kb on - strand, within Psest_4364at 4562.978 kb on - strand, within Psest_4364at 4563.010 kb on + strand, within Psest_4364at 4563.011 kb on - strand, within Psest_4364

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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4,561,501 - Psest_4362 0.83 +0.8
4,561,622 + -3.0
4,561,622 + +1.2
4,561,623 - +1.5
4,561,649 + -2.0
4,561,650 - -1.0
4,561,657 - +0.4
4,561,720 - +1.4
4,561,765 + Psest_4363 0.14 +0.3
4,561,808 + Psest_4363 0.19 -1.1
4,561,808 + Psest_4363 0.19 -1.8
4,561,808 + Psest_4363 0.19 +0.1
4,561,818 + Psest_4363 0.21 +0.9
4,561,818 + Psest_4363 0.21 -0.4
4,561,818 + Psest_4363 0.21 -2.9
4,561,887 + Psest_4363 0.29 +0.6
4,561,887 + Psest_4363 0.29 -1.2
4,561,887 + Psest_4363 0.29 -1.6
4,561,887 + Psest_4363 0.29 +0.4
4,561,887 + Psest_4363 0.29 +0.5
4,561,887 + Psest_4363 0.29 +2.3
4,561,887 + Psest_4363 0.29 -1.2
4,561,887 + Psest_4363 0.29 +0.1
4,561,887 + Psest_4363 0.29 +0.5
4,561,888 - Psest_4363 0.30 -0.4
4,561,888 - Psest_4363 0.30 -1.5
4,561,888 - Psest_4363 0.30 -1.4
4,561,888 - Psest_4363 0.30 -1.0
4,561,888 - Psest_4363 0.30 -0.1
4,561,888 - Psest_4363 0.30 -0.9
4,561,986 + Psest_4363 0.42 -0.8
4,561,986 + Psest_4363 0.42 +1.0
4,561,986 + Psest_4363 0.42 +0.6
4,561,986 + Psest_4363 0.42 -0.1
4,561,987 - Psest_4363 0.42 -1.6
4,562,030 + Psest_4363 0.48 +0.1
4,562,030 + Psest_4363 0.48 -0.8
4,562,030 + Psest_4363 0.48 -0.4
4,562,031 - Psest_4363 0.48 -0.1
4,562,082 + Psest_4363 0.54 -0.3
4,562,082 + Psest_4363 0.54 -0.4
4,562,082 + Psest_4363 0.54 -0.8
4,562,082 + Psest_4363 0.54 +0.7
4,562,082 + Psest_4363 0.54 -0.2
4,562,082 + Psest_4363 0.54 +1.4
4,562,083 - Psest_4363 0.54 -0.4
4,562,083 - Psest_4363 0.54 -0.1
4,562,083 - Psest_4363 0.54 -0.8
4,562,083 - Psest_4363 0.54 -0.1
4,562,088 + Psest_4363 0.55 +1.5
4,562,089 - Psest_4363 0.55 -1.0
4,562,089 - Psest_4363 0.55 -0.6
4,562,089 - Psest_4363 0.55 -1.1
4,562,089 - Psest_4363 0.55 +0.1
4,562,262 + Psest_4363 0.77 -0.3
4,562,262 + Psest_4363 0.77 +1.0
4,562,262 + Psest_4363 0.77 -1.1
4,562,272 - Psest_4363 0.78 +0.4
4,562,482 - -2.1
4,562,523 + +1.9
4,562,523 + -1.3
4,562,524 - +0.9
4,562,524 - +0.9
4,562,691 + Psest_4364 0.35 +1.3
4,562,704 + Psest_4364 0.37 +1.4
4,562,841 + Psest_4364 0.58 -0.3
4,562,911 - Psest_4364 0.69 +0.7
4,562,977 + Psest_4364 0.79 +0.3
4,562,977 + Psest_4364 0.79 -1.9
4,562,978 - Psest_4364 0.79 -1.1
4,562,978 - Psest_4364 0.79 -0.4
4,562,978 - Psest_4364 0.79 +0.7
4,562,978 - Psest_4364 0.79 +1.1
4,563,010 + Psest_4364 0.84 +0.8
4,563,011 - Psest_4364 0.85 +0.4

Or see this region's nucleotide sequence