Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3433

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3432 and Psest_3433 are separated by 147 nucleotidesPsest_3433 and Psest_3434 are separated by 159 nucleotides Psest_3432: Psest_3432 - Site-specific recombinase XerD, at 3,600,535 to 3,601,800 _3432 Psest_3433: Psest_3433 - ATP-binding cassette protein, ChvD family, at 3,601,948 to 3,603,642 _3433 Psest_3434: Psest_3434 - Serine phosphatase RsbU, regulator of sigma subunit, at 3,603,802 to 3,605,793 _3434 Position (kb) 3601 3602 3603 3604Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3600.959 kb on + strand, within Psest_3432at 3600.960 kb on - strand, within Psest_3432at 3600.971 kb on + strand, within Psest_3432at 3600.989 kb on + strand, within Psest_3432at 3601.087 kb on + strand, within Psest_3432at 3601.087 kb on + strand, within Psest_3432at 3601.181 kb on + strand, within Psest_3432at 3601.181 kb on + strand, within Psest_3432at 3601.181 kb on + strand, within Psest_3432at 3601.181 kb on + strand, within Psest_3432at 3601.181 kb on + strand, within Psest_3432at 3601.182 kb on - strand, within Psest_3432at 3601.182 kb on - strand, within Psest_3432at 3601.182 kb on - strand, within Psest_3432at 3601.182 kb on - strand, within Psest_3432at 3601.182 kb on - strand, within Psest_3432at 3601.185 kb on + strand, within Psest_3432at 3601.185 kb on + strand, within Psest_3432at 3601.185 kb on + strand, within Psest_3432at 3601.185 kb on + strand, within Psest_3432at 3601.370 kb on + strand, within Psest_3432at 3601.370 kb on + strand, within Psest_3432at 3601.401 kb on - strand, within Psest_3432at 3601.469 kb on + strand, within Psest_3432at 3601.499 kb on + strand, within Psest_3432at 3601.500 kb on - strand, within Psest_3432at 3601.571 kb on + strand, within Psest_3432at 3601.572 kb on - strand, within Psest_3432at 3601.614 kb on + strand, within Psest_3432at 3601.614 kb on + strand, within Psest_3432at 3601.628 kb on - strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.648 kb on + strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.649 kb on - strand, within Psest_3432at 3601.661 kb on + strand, within Psest_3432at 3601.662 kb on - strand, within Psest_3432at 3601.662 kb on - strand, within Psest_3432at 3601.662 kb on - strand, within Psest_3432at 3601.662 kb on - strand, within Psest_3432at 3601.709 kb on + strandat 3601.709 kb on + strandat 3601.709 kb on + strandat 3601.709 kb on + strandat 3601.709 kb on + strandat 3601.709 kb on + strandat 3601.709 kb on + strandat 3601.709 kb on + strandat 3601.724 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.736 kb on + strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.737 kb on - strandat 3601.750 kb on + strandat 3601.750 kb on + strandat 3601.751 kb on - strandat 3601.783 kb on + strandat 3601.910 kb on - strandat 3601.984 kb on + strandat 3601.985 kb on - strandat 3601.991 kb on - strandat 3602.632 kb on + strand, within Psest_3433at 3602.632 kb on + strand, within Psest_3433at 3602.693 kb on - strand, within Psest_3433at 3602.704 kb on + strand, within Psest_3433at 3602.704 kb on + strand, within Psest_3433at 3602.704 kb on + strand, within Psest_3433at 3602.704 kb on + strand, within Psest_3433at 3602.704 kb on + strand, within Psest_3433at 3602.705 kb on - strand, within Psest_3433at 3602.705 kb on - strand, within Psest_3433at 3602.705 kb on - strand, within Psest_3433at 3602.908 kb on + strand, within Psest_3433at 3602.908 kb on + strand, within Psest_3433at 3602.908 kb on + strand, within Psest_3433at 3602.909 kb on - strand, within Psest_3433at 3602.909 kb on - strand, within Psest_3433at 3602.909 kb on - strand, within Psest_3433at 3602.909 kb on - strand, within Psest_3433at 3602.909 kb on - strand, within Psest_3433at 3603.232 kb on + strand, within Psest_3433at 3603.232 kb on + strand, within Psest_3433at 3603.233 kb on - strand, within Psest_3433at 3603.233 kb on - strand, within Psest_3433at 3603.233 kb on - strand, within Psest_3433at 3603.514 kb on + strandat 3603.515 kb on - strandat 3603.515 kb on - strandat 3603.553 kb on + strandat 3603.553 kb on + strandat 3603.553 kb on + strandat 3603.554 kb on - strandat 3603.554 kb on - strandat 3603.554 kb on - strandat 3603.562 kb on + strandat 3603.562 kb on + strandat 3603.563 kb on - strandat 3603.623 kb on - strandat 3603.623 kb on - strandat 3603.782 kb on - strandat 3603.948 kb on - strandat 3604.123 kb on + strand, within Psest_3434at 3604.123 kb on + strand, within Psest_3434at 3604.123 kb on + strand, within Psest_3434at 3604.123 kb on + strand, within Psest_3434at 3604.123 kb on + strand, within Psest_3434at 3604.124 kb on - strand, within Psest_3434at 3604.124 kb on - strand, within Psest_3434at 3604.124 kb on - strand, within Psest_3434at 3604.124 kb on - strand, within Psest_3434at 3604.153 kb on + strand, within Psest_3434at 3604.153 kb on + strand, within Psest_3434at 3604.153 kb on + strand, within Psest_3434at 3604.153 kb on + strand, within Psest_3434at 3604.153 kb on + strand, within Psest_3434at 3604.153 kb on + strand, within Psest_3434at 3604.153 kb on + strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.154 kb on - strand, within Psest_3434at 3604.238 kb on - strand, within Psest_3434at 3604.310 kb on + strand, within Psest_3434at 3604.311 kb on - strand, within Psest_3434at 3604.311 kb on - strand, within Psest_3434at 3604.311 kb on - strand, within Psest_3434at 3604.311 kb on - strand, within Psest_3434at 3604.311 kb on - strand, within Psest_3434at 3604.349 kb on + strand, within Psest_3434at 3604.349 kb on + strand, within Psest_3434at 3604.349 kb on + strand, within Psest_3434at 3604.349 kb on + strand, within Psest_3434at 3604.349 kb on + strand, within Psest_3434at 3604.349 kb on + strand, within Psest_3434at 3604.349 kb on + strand, within Psest_3434at 3604.350 kb on - strand, within Psest_3434at 3604.350 kb on - strand, within Psest_3434at 3604.350 kb on - strand, within Psest_3434at 3604.350 kb on - strand, within Psest_3434at 3604.350 kb on - strand, within Psest_3434at 3604.517 kb on + strand, within Psest_3434

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
3,600,959 + Psest_3432 0.33 +0.9
3,600,960 - Psest_3432 0.34 +0.1
3,600,971 + Psest_3432 0.34 -0.3
3,600,989 + Psest_3432 0.36 -0.1
3,601,087 + Psest_3432 0.44 +0.2
3,601,087 + Psest_3432 0.44 +0.8
3,601,181 + Psest_3432 0.51 +0.2
3,601,181 + Psest_3432 0.51 +0.1
3,601,181 + Psest_3432 0.51 -2.0
3,601,181 + Psest_3432 0.51 +0.3
3,601,181 + Psest_3432 0.51 -1.0
3,601,182 - Psest_3432 0.51 -0.2
3,601,182 - Psest_3432 0.51 +0.1
3,601,182 - Psest_3432 0.51 +0.7
3,601,182 - Psest_3432 0.51 +0.6
3,601,182 - Psest_3432 0.51 +0.8
3,601,185 + Psest_3432 0.51 -0.1
3,601,185 + Psest_3432 0.51 +2.1
3,601,185 + Psest_3432 0.51 -0.0
3,601,185 + Psest_3432 0.51 +0.9
3,601,370 + Psest_3432 0.66 -0.9
3,601,370 + Psest_3432 0.66 -0.1
3,601,401 - Psest_3432 0.68 +0.9
3,601,469 + Psest_3432 0.74 +0.9
3,601,499 + Psest_3432 0.76 +0.3
3,601,500 - Psest_3432 0.76 +2.4
3,601,571 + Psest_3432 0.82 -0.7
3,601,572 - Psest_3432 0.82 +0.3
3,601,614 + Psest_3432 0.85 -0.7
3,601,614 + Psest_3432 0.85 -0.9
3,601,628 - Psest_3432 0.86 +0.5
3,601,648 + Psest_3432 0.88 +0.3
3,601,648 + Psest_3432 0.88 -0.6
3,601,648 + Psest_3432 0.88 +0.3
3,601,648 + Psest_3432 0.88 -2.6
3,601,648 + Psest_3432 0.88 -0.0
3,601,648 + Psest_3432 0.88 +1.7
3,601,648 + Psest_3432 0.88 -0.4
3,601,648 + Psest_3432 0.88 -1.6
3,601,649 - Psest_3432 0.88 +0.0
3,601,649 - Psest_3432 0.88 +1.1
3,601,649 - Psest_3432 0.88 +1.1
3,601,649 - Psest_3432 0.88 +0.6
3,601,649 - Psest_3432 0.88 +1.5
3,601,649 - Psest_3432 0.88 +0.5
3,601,649 - Psest_3432 0.88 +0.2
3,601,649 - Psest_3432 0.88 +0.4
3,601,661 + Psest_3432 0.89 +0.9
3,601,662 - Psest_3432 0.89 +0.3
3,601,662 - Psest_3432 0.89 +0.5
3,601,662 - Psest_3432 0.89 +1.1
3,601,662 - Psest_3432 0.89 +0.5
3,601,709 + -0.6
3,601,709 + -0.5
3,601,709 + +0.1
3,601,709 + -0.3
3,601,709 + -0.5
3,601,709 + -0.2
3,601,709 + -1.5
3,601,709 + +0.9
3,601,724 + -0.5
3,601,736 + -0.0
3,601,736 + -0.4
3,601,736 + -0.4
3,601,736 + -1.2
3,601,736 + +1.2
3,601,736 + +0.1
3,601,736 + -0.5
3,601,736 + -1.3
3,601,736 + -0.7
3,601,736 + -0.2
3,601,736 + -0.6
3,601,736 + -0.6
3,601,736 + -0.1
3,601,736 + -0.4
3,601,737 - +1.8
3,601,737 - +1.3
3,601,737 - +0.5
3,601,737 - -0.9
3,601,737 - +0.4
3,601,737 - +1.2
3,601,737 - +0.9
3,601,737 - +0.3
3,601,737 - +1.6
3,601,737 - +1.0
3,601,750 + -0.1
3,601,750 + -1.3
3,601,751 - +0.7
3,601,783 + -2.4
3,601,910 - +0.1
3,601,984 + +0.9
3,601,985 - -0.0
3,601,991 - +0.9
3,602,632 + Psest_3433 0.40 -0.3
3,602,632 + Psest_3433 0.40 +1.5
3,602,693 - Psest_3433 0.44 -1.2
3,602,704 + Psest_3433 0.45 +1.0
3,602,704 + Psest_3433 0.45 +0.6
3,602,704 + Psest_3433 0.45 +0.7
3,602,704 + Psest_3433 0.45 +1.7
3,602,704 + Psest_3433 0.45 +1.0
3,602,705 - Psest_3433 0.45 +0.8
3,602,705 - Psest_3433 0.45 +0.1
3,602,705 - Psest_3433 0.45 +2.2
3,602,908 + Psest_3433 0.57 +1.1
3,602,908 + Psest_3433 0.57 +0.9
3,602,908 + Psest_3433 0.57 +0.0
3,602,909 - Psest_3433 0.57 +1.2
3,602,909 - Psest_3433 0.57 +1.0
3,602,909 - Psest_3433 0.57 +1.2
3,602,909 - Psest_3433 0.57 +0.8
3,602,909 - Psest_3433 0.57 +0.8
3,603,232 + Psest_3433 0.76 +1.8
3,603,232 + Psest_3433 0.76 +1.2
3,603,233 - Psest_3433 0.76 +0.3
3,603,233 - Psest_3433 0.76 +0.9
3,603,233 - Psest_3433 0.76 +1.7
3,603,514 + +0.8
3,603,515 - +0.9
3,603,515 - +1.2
3,603,553 + +1.0
3,603,553 + +1.4
3,603,553 + +1.1
3,603,554 - +1.6
3,603,554 - +0.7
3,603,554 - +1.7
3,603,562 + +0.1
3,603,562 + +1.3
3,603,563 - +3.0
3,603,623 - +0.9
3,603,623 - +0.2
3,603,782 - +0.8
3,603,948 - +0.8
3,604,123 + Psest_3434 0.16 +0.4
3,604,123 + Psest_3434 0.16 +1.9
3,604,123 + Psest_3434 0.16 +0.4
3,604,123 + Psest_3434 0.16 +0.4
3,604,123 + Psest_3434 0.16 +0.6
3,604,124 - Psest_3434 0.16 +0.6
3,604,124 - Psest_3434 0.16 +1.9
3,604,124 - Psest_3434 0.16 +0.6
3,604,124 - Psest_3434 0.16 -0.3
3,604,153 + Psest_3434 0.18 +0.3
3,604,153 + Psest_3434 0.18 +1.9
3,604,153 + Psest_3434 0.18 +0.2
3,604,153 + Psest_3434 0.18 +1.5
3,604,153 + Psest_3434 0.18 +0.7
3,604,153 + Psest_3434 0.18 +0.5
3,604,153 + Psest_3434 0.18 +1.1
3,604,154 - Psest_3434 0.18 +0.6
3,604,154 - Psest_3434 0.18 +0.5
3,604,154 - Psest_3434 0.18 +0.8
3,604,154 - Psest_3434 0.18 +1.8
3,604,154 - Psest_3434 0.18 +0.1
3,604,154 - Psest_3434 0.18 +3.7
3,604,154 - Psest_3434 0.18 +0.8
3,604,154 - Psest_3434 0.18 +0.2
3,604,154 - Psest_3434 0.18 -0.2
3,604,154 - Psest_3434 0.18 +0.9
3,604,154 - Psest_3434 0.18 +0.9
3,604,154 - Psest_3434 0.18 +0.8
3,604,238 - Psest_3434 0.22 +0.7
3,604,310 + Psest_3434 0.26 +0.9
3,604,311 - Psest_3434 0.26 +0.0
3,604,311 - Psest_3434 0.26 +2.0
3,604,311 - Psest_3434 0.26 +1.4
3,604,311 - Psest_3434 0.26 -1.1
3,604,311 - Psest_3434 0.26 +0.5
3,604,349 + Psest_3434 0.27 +0.9
3,604,349 + Psest_3434 0.27 +0.1
3,604,349 + Psest_3434 0.27 +0.0
3,604,349 + Psest_3434 0.27 +1.2
3,604,349 + Psest_3434 0.27 +0.0
3,604,349 + Psest_3434 0.27 +1.3
3,604,349 + Psest_3434 0.27 +0.9
3,604,350 - Psest_3434 0.28 +1.5
3,604,350 - Psest_3434 0.28 +1.2
3,604,350 - Psest_3434 0.28 +0.5
3,604,350 - Psest_3434 0.28 -0.1
3,604,350 - Psest_3434 0.28 +0.1
3,604,517 + Psest_3434 0.36 +1.1

Or see this region's nucleotide sequence