Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3288 and Psest_3289 are separated by 320 nucleotides Psest_3289 and Psest_3290 are separated by 68 nucleotides Psest_3290 and Psest_3291 overlap by 41 nucleotides
Psest_3288: Psest_3288 - type IV-A pilus assembly ATPase PilB, at 3,453,814 to 3,455,517
_3288
Psest_3289: Psest_3289 - prepilin-type N-terminal cleavage/methylation domain, at 3,455,838 to 3,456,266
_3289
Psest_3290: Psest_3290 - prepilin-type N-terminal cleavage/methylation domain, at 3,456,335 to 3,456,751
_3290
Psest_3291: Psest_3291 - Lipid A core - O-antigen ligase and related enzymes, at 3,456,711 to 3,458,168
_3291
Position (kb)
3455
3456
3457 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3454.892 kb on + strand, within Psest_3288 at 3454.892 kb on + strand, within Psest_3288 at 3454.892 kb on + strand, within Psest_3288 at 3454.892 kb on + strand, within Psest_3288 at 3454.893 kb on - strand, within Psest_3288 at 3454.893 kb on - strand, within Psest_3288 at 3455.032 kb on + strand, within Psest_3288 at 3455.032 kb on + strand, within Psest_3288 at 3455.032 kb on + strand, within Psest_3288 at 3455.032 kb on + strand, within Psest_3288 at 3455.032 kb on + strand, within Psest_3288 at 3455.032 kb on + strand, within Psest_3288 at 3455.033 kb on - strand, within Psest_3288 at 3455.033 kb on - strand, within Psest_3288 at 3455.033 kb on - strand, within Psest_3288 at 3455.056 kb on + strand, within Psest_3288 at 3455.056 kb on + strand, within Psest_3288 at 3455.056 kb on + strand, within Psest_3288 at 3455.056 kb on + strand, within Psest_3288 at 3455.056 kb on + strand, within Psest_3288 at 3455.057 kb on - strand, within Psest_3288 at 3455.057 kb on - strand, within Psest_3288 at 3455.057 kb on - strand, within Psest_3288 at 3455.057 kb on - strand, within Psest_3288 at 3455.074 kb on - strand, within Psest_3288 at 3455.088 kb on - strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.089 kb on + strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.090 kb on - strand, within Psest_3288 at 3455.202 kb on + strand, within Psest_3288 at 3455.357 kb on - strand at 3455.393 kb on + strand at 3455.393 kb on + strand at 3455.393 kb on + strand at 3455.393 kb on + strand at 3455.393 kb on + strand at 3455.394 kb on - strand at 3455.394 kb on - strand at 3455.394 kb on - strand at 3455.398 kb on - strand at 3455.506 kb on - strand at 3455.518 kb on - strand at 3455.518 kb on - strand at 3455.518 kb on - strand at 3455.547 kb on + strand at 3455.549 kb on + strand at 3455.549 kb on + strand at 3455.549 kb on + strand at 3455.549 kb on + strand at 3455.549 kb on + strand at 3455.549 kb on + strand at 3455.549 kb on + strand at 3455.554 kb on + strand at 3455.554 kb on + strand at 3455.555 kb on - strand at 3455.555 kb on - strand at 3455.555 kb on - strand at 3455.555 kb on - strand at 3455.555 kb on - strand at 3455.555 kb on - strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.574 kb on + strand at 3455.575 kb on - strand at 3455.575 kb on - strand at 3455.575 kb on - strand at 3455.575 kb on - strand at 3455.586 kb on + strand at 3455.586 kb on + strand at 3455.586 kb on + strand at 3455.586 kb on + strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.587 kb on - strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.607 kb on + strand at 3455.608 kb on - strand at 3455.608 kb on - strand at 3455.608 kb on - strand at 3455.608 kb on - strand at 3455.630 kb on - strand at 3455.654 kb on - strand at 3455.667 kb on + strand at 3455.668 kb on - strand at 3455.714 kb on + strand at 3455.714 kb on + strand at 3455.714 kb on + strand at 3455.815 kb on + strand at 3455.864 kb on + strand at 3455.864 kb on + strand at 3455.864 kb on + strand at 3455.865 kb on - strand at 3455.865 kb on - strand at 3455.903 kb on + strand, within Psest_3289 at 3455.931 kb on + strand, within Psest_3289 at 3455.940 kb on + strand, within Psest_3289 at 3455.940 kb on + strand, within Psest_3289 at 3455.941 kb on - strand, within Psest_3289 at 3456.023 kb on + strand, within Psest_3289 at 3456.023 kb on + strand, within Psest_3289 at 3456.023 kb on + strand, within Psest_3289 at 3456.023 kb on + strand, within Psest_3289 at 3456.023 kb on + strand, within Psest_3289 at 3456.024 kb on - strand, within Psest_3289 at 3456.024 kb on - strand, within Psest_3289 at 3456.057 kb on + strand, within Psest_3289 at 3456.058 kb on - strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.084 kb on + strand, within Psest_3289 at 3456.085 kb on - strand, within Psest_3289 at 3456.146 kb on + strand, within Psest_3289 at 3456.147 kb on - strand, within Psest_3289 at 3456.197 kb on + strand, within Psest_3289 at 3456.243 kb on + strand at 3456.243 kb on + strand at 3456.243 kb on + strand at 3456.243 kb on + strand at 3456.243 kb on + strand at 3456.244 kb on - strand at 3456.244 kb on - strand at 3456.244 kb on - strand at 3456.244 kb on - strand at 3456.265 kb on - strand at 3456.269 kb on + strand at 3456.269 kb on + strand at 3456.269 kb on + strand at 3456.269 kb on + strand at 3456.293 kb on + strand at 3456.315 kb on + strand at 3456.435 kb on - strand, within Psest_3290 at 3456.435 kb on - strand, within Psest_3290 at 3456.435 kb on - strand, within Psest_3290 at 3456.554 kb on - strand, within Psest_3290 at 3456.578 kb on + strand, within Psest_3290 at 3456.579 kb on - strand, within Psest_3290 at 3456.597 kb on + strand, within Psest_3290 at 3456.597 kb on + strand, within Psest_3290 at 3456.597 kb on + strand, within Psest_3290 at 3456.597 kb on + strand, within Psest_3290 at 3456.598 kb on - strand, within Psest_3290 at 3456.598 kb on - strand, within Psest_3290 at 3456.598 kb on - strand, within Psest_3290 at 3456.671 kb on - strand, within Psest_3290 at 3456.707 kb on - strand, within Psest_3290 at 3456.707 kb on - strand, within Psest_3290 at 3456.728 kb on + strand at 3456.729 kb on - strand at 3456.730 kb on + strand at 3456.901 kb on + strand, within Psest_3291 at 3456.902 kb on - strand, within Psest_3291 at 3456.910 kb on + strand, within Psest_3291 at 3456.999 kb on - strand, within Psest_3291 at 3457.025 kb on - strand, within Psest_3291 at 3457.191 kb on + strand, within Psest_3291 at 3457.191 kb on + strand, within Psest_3291 at 3457.196 kb on - strand, within Psest_3291 at 3457.196 kb on - strand, within Psest_3291 at 3457.196 kb on - strand, within Psest_3291 at 3457.243 kb on - strand, within Psest_3291
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 3,454,892 + Psest_3288 0.63 +0.4 3,454,892 + Psest_3288 0.63 -1.3 3,454,892 + Psest_3288 0.63 -1.1 3,454,892 + Psest_3288 0.63 -0.3 3,454,893 - Psest_3288 0.63 +0.5 3,454,893 - Psest_3288 0.63 +0.5 3,455,032 + Psest_3288 0.71 +3.2 3,455,032 + Psest_3288 0.71 +0.1 3,455,032 + Psest_3288 0.71 -0.8 3,455,032 + Psest_3288 0.71 -1.3 3,455,032 + Psest_3288 0.71 -0.8 3,455,032 + Psest_3288 0.71 -1.2 3,455,033 - Psest_3288 0.72 +1.5 3,455,033 - Psest_3288 0.72 +0.2 3,455,033 - Psest_3288 0.72 -0.7 3,455,056 + Psest_3288 0.73 +0.6 3,455,056 + Psest_3288 0.73 -0.3 3,455,056 + Psest_3288 0.73 -0.9 3,455,056 + Psest_3288 0.73 -1.9 3,455,056 + Psest_3288 0.73 +0.6 3,455,057 - Psest_3288 0.73 -1.0 3,455,057 - Psest_3288 0.73 +1.1 3,455,057 - Psest_3288 0.73 +0.1 3,455,057 - Psest_3288 0.73 -0.5 3,455,074 - Psest_3288 0.74 +0.1 3,455,088 - Psest_3288 0.75 +0.2 3,455,089 + Psest_3288 0.75 -1.4 3,455,089 + Psest_3288 0.75 -1.7 3,455,089 + Psest_3288 0.75 -0.5 3,455,089 + Psest_3288 0.75 -1.2 3,455,089 + Psest_3288 0.75 +0.1 3,455,089 + Psest_3288 0.75 -2.2 3,455,089 + Psest_3288 0.75 -1.3 3,455,089 + Psest_3288 0.75 -0.0 3,455,089 + Psest_3288 0.75 -1.2 3,455,090 - Psest_3288 0.75 +0.1 3,455,090 - Psest_3288 0.75 +1.8 3,455,090 - Psest_3288 0.75 +0.3 3,455,090 - Psest_3288 0.75 -0.7 3,455,090 - Psest_3288 0.75 -0.5 3,455,090 - Psest_3288 0.75 +0.9 3,455,090 - Psest_3288 0.75 +0.4 3,455,090 - Psest_3288 0.75 -0.5 3,455,202 + Psest_3288 0.81 -1.0 3,455,357 - -2.4 3,455,393 + +0.9 3,455,393 + +0.7 3,455,393 + +0.8 3,455,393 + -0.5 3,455,393 + -1.4 3,455,394 - +0.1 3,455,394 - -1.0 3,455,394 - -0.1 3,455,398 - -0.3 3,455,506 - +0.6 3,455,518 - +1.1 3,455,518 - -0.1 3,455,518 - +2.2 3,455,547 + -0.5 3,455,549 + +0.5 3,455,549 + -0.2 3,455,549 + +0.1 3,455,549 + -0.1 3,455,549 + +0.3 3,455,549 + +0.3 3,455,549 + -1.7 3,455,554 + -1.4 3,455,554 + -0.3 3,455,555 - -0.0 3,455,555 - +0.0 3,455,555 - +0.1 3,455,555 - -0.2 3,455,555 - +0.9 3,455,555 - +0.1 3,455,574 + -2.1 3,455,574 + -1.4 3,455,574 + -1.3 3,455,574 + +0.3 3,455,574 + -0.7 3,455,574 + -0.3 3,455,574 + -0.2 3,455,574 + -0.6 3,455,574 + -1.3 3,455,574 + -0.3 3,455,575 - -0.2 3,455,575 - +0.6 3,455,575 - +0.0 3,455,575 - +0.8 3,455,586 + -2.3 3,455,586 + -0.5 3,455,586 + +0.1 3,455,586 + -0.1 3,455,587 - +0.7 3,455,587 - -0.0 3,455,587 - -0.6 3,455,587 - +0.0 3,455,587 - +0.3 3,455,587 - +0.1 3,455,587 - +1.0 3,455,587 - +1.5 3,455,587 - +1.2 3,455,587 - +0.6 3,455,587 - +0.7 3,455,607 + -0.2 3,455,607 + +0.7 3,455,607 + -2.4 3,455,607 + +1.7 3,455,607 + -0.4 3,455,607 + -1.4 3,455,607 + -1.3 3,455,607 + -1.0 3,455,607 + +0.1 3,455,607 + -2.3 3,455,607 + -0.3 3,455,608 - +2.2 3,455,608 - +2.2 3,455,608 - +3.2 3,455,608 - +1.3 3,455,630 - +1.6 3,455,654 - +1.2 3,455,667 + -2.0 3,455,668 - +1.9 3,455,714 + -0.8 3,455,714 + -2.3 3,455,714 + -1.2 3,455,815 + -0.6 3,455,864 + +2.3 3,455,864 + +2.1 3,455,864 + +1.2 3,455,865 - +2.3 3,455,865 - +1.0 3,455,903 + Psest_3289 0.15 +2.2 3,455,931 + Psest_3289 0.22 +1.6 3,455,940 + Psest_3289 0.24 +0.9 3,455,940 + Psest_3289 0.24 +1.2 3,455,941 - Psest_3289 0.24 +2.1 3,456,023 + Psest_3289 0.43 +2.3 3,456,023 + Psest_3289 0.43 +1.4 3,456,023 + Psest_3289 0.43 +1.5 3,456,023 + Psest_3289 0.43 +1.7 3,456,023 + Psest_3289 0.43 +1.4 3,456,024 - Psest_3289 0.43 +1.0 3,456,024 - Psest_3289 0.43 +0.4 3,456,057 + Psest_3289 0.51 +1.7 3,456,058 - Psest_3289 0.51 +0.7 3,456,084 + Psest_3289 0.57 +1.9 3,456,084 + Psest_3289 0.57 +2.4 3,456,084 + Psest_3289 0.57 +2.2 3,456,084 + Psest_3289 0.57 -0.7 3,456,084 + Psest_3289 0.57 +2.3 3,456,084 + Psest_3289 0.57 +2.4 3,456,084 + Psest_3289 0.57 +0.8 3,456,084 + Psest_3289 0.57 +1.1 3,456,085 - Psest_3289 0.58 +1.7 3,456,146 + Psest_3289 0.72 +1.9 3,456,147 - Psest_3289 0.72 +0.9 3,456,197 + Psest_3289 0.84 +1.1 3,456,243 + +0.9 3,456,243 + +0.8 3,456,243 + +1.5 3,456,243 + +1.3 3,456,243 + -0.2 3,456,244 - +1.4 3,456,244 - +1.3 3,456,244 - +0.8 3,456,244 - +2.2 3,456,265 - +0.9 3,456,269 + +0.3 3,456,269 + +1.5 3,456,269 + -0.2 3,456,269 + +0.9 3,456,293 + +0.7 3,456,315 + +0.3 3,456,435 - Psest_3290 0.24 +0.4 3,456,435 - Psest_3290 0.24 +0.1 3,456,435 - Psest_3290 0.24 +1.6 3,456,554 - Psest_3290 0.53 +1.2 3,456,578 + Psest_3290 0.58 -0.2 3,456,579 - Psest_3290 0.59 +0.3 3,456,597 + Psest_3290 0.63 -0.1 3,456,597 + Psest_3290 0.63 -0.3 3,456,597 + Psest_3290 0.63 -1.3 3,456,597 + Psest_3290 0.63 -0.2 3,456,598 - Psest_3290 0.63 +0.0 3,456,598 - Psest_3290 0.63 +0.0 3,456,598 - Psest_3290 0.63 +0.6 3,456,671 - Psest_3290 0.81 +2.7 3,456,707 - Psest_3290 0.89 -0.6 3,456,707 - Psest_3290 0.89 +1.3 3,456,728 + -0.1 3,456,729 - +0.4 3,456,730 + -0.2 3,456,901 + Psest_3291 0.13 -0.9 3,456,902 - Psest_3291 0.13 +0.5 3,456,910 + Psest_3291 0.14 +0.9 3,456,999 - Psest_3291 0.20 -1.5 3,457,025 - Psest_3291 0.22 +0.0 3,457,191 + Psest_3291 0.33 +0.7 3,457,191 + Psest_3291 0.33 +0.6 3,457,196 - Psest_3291 0.33 +1.1 3,457,196 - Psest_3291 0.33 +0.8 3,457,196 - Psest_3291 0.33 +1.0 3,457,243 - Psest_3291 0.36 +0.1
Or see this region's nucleotide sequence