Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2899

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2896 and Psest_2897 are separated by 70 nucleotidesPsest_2897 and Psest_2898 are separated by 146 nucleotidesPsest_2898 and Psest_2899 overlap by 8 nucleotidesPsest_2899 and Psest_2900 overlap by 8 nucleotidesPsest_2900 and Psest_2901 are separated by 12 nucleotidesPsest_2901 and Psest_2902 are separated by 67 nucleotides Psest_2896: Psest_2896 - hypothetical protein, at 3,092,949 to 3,093,962 _2896 Psest_2897: Psest_2897 - hypothetical protein, at 3,094,033 to 3,094,308 _2897 Psest_2898: Psest_2898 - hypothetical protein, at 3,094,455 to 3,094,736 _2898 Psest_2899: Psest_2899 - hypothetical protein, at 3,094,729 to 3,094,983 _2899 Psest_2900: Psest_2900 - hypothetical protein, at 3,094,976 to 3,095,365 _2900 Psest_2901: Psest_2901 - hypothetical protein, at 3,095,378 to 3,095,749 _2901 Psest_2902: Psest_2902 - hypothetical protein, at 3,095,817 to 3,097,097 _2902 Position (kb) 3094 3095Strain fitness (log2 ratio) -2 -1 0 1 2at 3093.816 kb on - strand, within Psest_2896at 3093.833 kb on + strand, within Psest_2896at 3094.215 kb on - strand, within Psest_2897at 3094.426 kb on + strandat 3094.426 kb on + strandat 3094.461 kb on - strandat 3094.461 kb on - strandat 3094.525 kb on - strand, within Psest_2898at 3094.525 kb on - strand, within Psest_2898at 3094.525 kb on - strand, within Psest_2898at 3094.566 kb on + strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.567 kb on - strand, within Psest_2898at 3094.591 kb on + strand, within Psest_2898at 3094.722 kb on + strandat 3094.723 kb on - strandat 3094.808 kb on + strand, within Psest_2899at 3094.809 kb on - strand, within Psest_2899at 3094.969 kb on + strandat 3094.969 kb on + strandat 3095.021 kb on + strand, within Psest_2900at 3095.022 kb on - strand, within Psest_2900at 3095.022 kb on - strand, within Psest_2900at 3095.022 kb on - strand, within Psest_2900at 3095.075 kb on + strand, within Psest_2900at 3095.075 kb on + strand, within Psest_2900at 3095.075 kb on + strand, within Psest_2900at 3095.092 kb on + strand, within Psest_2900at 3095.092 kb on + strand, within Psest_2900at 3095.092 kb on + strand, within Psest_2900at 3095.126 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.253 kb on + strand, within Psest_2900at 3095.254 kb on - strand, within Psest_2900at 3095.254 kb on - strand, within Psest_2900at 3095.388 kb on + strandat 3095.388 kb on + strandat 3095.651 kb on - strand, within Psest_2901at 3095.651 kb on - strand, within Psest_2901at 3095.704 kb on + strand, within Psest_2901at 3095.803 kb on + strandat 3095.809 kb on + strandat 3095.810 kb on - strandat 3095.898 kb on + strandat 3095.898 kb on + strandat 3095.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,093,816 - Psest_2896 0.86 -0.2
3,093,833 + Psest_2896 0.87 -1.7
3,094,215 - Psest_2897 0.66 +2.3
3,094,426 + -0.2
3,094,426 + +0.1
3,094,461 - +0.2
3,094,461 - -1.1
3,094,525 - Psest_2898 0.25 +0.6
3,094,525 - Psest_2898 0.25 -0.3
3,094,525 - Psest_2898 0.25 -0.6
3,094,566 + Psest_2898 0.39 -0.4
3,094,567 - Psest_2898 0.40 +0.9
3,094,567 - Psest_2898 0.40 +0.1
3,094,567 - Psest_2898 0.40 -0.2
3,094,567 - Psest_2898 0.40 +0.2
3,094,567 - Psest_2898 0.40 +0.5
3,094,567 - Psest_2898 0.40 -0.3
3,094,567 - Psest_2898 0.40 -0.5
3,094,567 - Psest_2898 0.40 +0.5
3,094,567 - Psest_2898 0.40 +0.5
3,094,567 - Psest_2898 0.40 -1.6
3,094,567 - Psest_2898 0.40 +0.7
3,094,591 + Psest_2898 0.48 +0.5
3,094,722 + +0.5
3,094,723 - +0.6
3,094,808 + Psest_2899 0.31 +1.8
3,094,809 - Psest_2899 0.31 +0.8
3,094,969 + -1.9
3,094,969 + -0.6
3,095,021 + Psest_2900 0.12 -0.0
3,095,022 - Psest_2900 0.12 +0.2
3,095,022 - Psest_2900 0.12 -0.1
3,095,022 - Psest_2900 0.12 -0.6
3,095,075 + Psest_2900 0.25 +0.8
3,095,075 + Psest_2900 0.25 -0.7
3,095,075 + Psest_2900 0.25 +1.8
3,095,092 + Psest_2900 0.30 +0.6
3,095,092 + Psest_2900 0.30 -0.2
3,095,092 + Psest_2900 0.30 +0.4
3,095,126 + Psest_2900 0.38 -0.2
3,095,253 + Psest_2900 0.71 +0.3
3,095,253 + Psest_2900 0.71 +0.0
3,095,253 + Psest_2900 0.71 -0.2
3,095,253 + Psest_2900 0.71 -0.4
3,095,254 - Psest_2900 0.71 -0.2
3,095,254 - Psest_2900 0.71 -0.5
3,095,388 + +2.0
3,095,388 + -0.5
3,095,651 - Psest_2901 0.73 -0.4
3,095,651 - Psest_2901 0.73 +0.1
3,095,704 + Psest_2901 0.88 -1.7
3,095,803 + +0.1
3,095,809 + -0.4
3,095,810 - +1.3
3,095,898 + -0.3
3,095,898 + +0.6
3,095,901 - +1.6

Or see this region's nucleotide sequence