Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2604

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2603 and Psest_2604 are separated by 25 nucleotidesPsest_2604 and Psest_2605 are separated by 57 nucleotidesPsest_2605 and Psest_2606 are separated by 62 nucleotides Psest_2603: Psest_2603 - capsular exopolysaccharide family, at 2,784,723 to 2,786,936 _2603 Psest_2604: Psest_2604 - WbqC-like protein family., at 2,786,962 to 2,787,705 _2604 Psest_2605: Psest_2605 - transcriptional activator RfaH, at 2,787,763 to 2,788,272 _2605 Psest_2606: Psest_2606 - Glycosyltransferase, at 2,788,335 to 2,789,645 _2606 Position (kb) 2786 2787 2788Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2786.016 kb on + strand, within Psest_2603at 2786.016 kb on + strand, within Psest_2603at 2786.127 kb on + strand, within Psest_2603at 2786.178 kb on + strand, within Psest_2603at 2786.179 kb on - strand, within Psest_2603at 2786.674 kb on - strand, within Psest_2603at 2786.910 kb on + strandat 2786.910 kb on + strandat 2786.910 kb on + strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.916 kb on + strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.992 kb on + strandat 2786.993 kb on - strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2787.005 kb on - strandat 2787.005 kb on - strandat 2787.013 kb on + strandat 2787.067 kb on + strand, within Psest_2604at 2787.067 kb on + strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.239 kb on - strand, within Psest_2604at 2787.239 kb on - strand, within Psest_2604at 2787.352 kb on + strand, within Psest_2604at 2787.438 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.494 kb on - strand, within Psest_2604at 2787.559 kb on + strand, within Psest_2604at 2787.559 kb on + strand, within Psest_2604at 2787.560 kb on - strand, within Psest_2604at 2787.560 kb on - strand, within Psest_2604at 2787.560 kb on - strand, within Psest_2604at 2787.771 kb on + strandat 2787.771 kb on + strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.791 kb on - strandat 2787.937 kb on + strand, within Psest_2605at 2787.977 kb on - strand, within Psest_2605at 2788.253 kb on - strandat 2788.345 kb on + strandat 2788.346 kb on - strandat 2788.363 kb on - strandat 2788.363 kb on - strandat 2788.539 kb on + strand, within Psest_2606at 2788.540 kb on - strand, within Psest_2606at 2788.540 kb on - strand, within Psest_2606at 2788.540 kb on - strand, within Psest_2606at 2788.621 kb on + strand, within Psest_2606at 2788.621 kb on + strand, within Psest_2606at 2788.621 kb on + strand, within Psest_2606at 2788.622 kb on - strand, within Psest_2606at 2788.622 kb on - strand, within Psest_2606at 2788.622 kb on - strand, within Psest_2606at 2788.622 kb on - strand, within Psest_2606at 2788.622 kb on - strand, within Psest_2606at 2788.622 kb on - strand, within Psest_2606at 2788.632 kb on - strand, within Psest_2606

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,786,016 + Psest_2603 0.58 -2.3
2,786,016 + Psest_2603 0.58 -0.7
2,786,127 + Psest_2603 0.63 -1.7
2,786,178 + Psest_2603 0.66 -1.0
2,786,179 - Psest_2603 0.66 +0.8
2,786,674 - Psest_2603 0.88 +1.3
2,786,910 + -1.8
2,786,910 + -3.3
2,786,910 + -2.5
2,786,911 - +0.4
2,786,911 - +0.8
2,786,911 - +1.0
2,786,911 - +1.1
2,786,911 - +1.2
2,786,911 - -0.2
2,786,911 - +0.5
2,786,911 - +1.4
2,786,916 + -1.8
2,786,917 - -0.8
2,786,917 - +0.4
2,786,917 - +0.7
2,786,917 - +1.1
2,786,917 - +0.6
2,786,917 - +0.5
2,786,917 - +0.8
2,786,917 - +0.5
2,786,917 - +0.7
2,786,917 - +0.7
2,786,917 - +0.8
2,786,917 - +0.7
2,786,917 - +0.6
2,786,917 - -0.3
2,786,992 + -0.9
2,786,993 - +0.4
2,786,996 + -0.2
2,786,996 + -0.7
2,786,996 + -0.2
2,786,996 + -0.8
2,786,996 + -2.6
2,786,996 + -0.3
2,786,997 - +1.0
2,786,997 - +0.9
2,786,997 - +1.0
2,786,997 - +1.8
2,786,997 - +0.3
2,786,997 - +0.8
2,786,997 - +1.3
2,787,005 - +1.3
2,787,005 - +0.7
2,787,013 + -1.1
2,787,067 + Psest_2604 0.14 -1.5
2,787,067 + Psest_2604 0.14 -1.0
2,787,068 - Psest_2604 0.14 +1.4
2,787,068 - Psest_2604 0.14 +0.8
2,787,068 - Psest_2604 0.14 +2.0
2,787,068 - Psest_2604 0.14 +1.3
2,787,068 - Psest_2604 0.14 +1.0
2,787,068 - Psest_2604 0.14 +0.8
2,787,239 - Psest_2604 0.37 +1.1
2,787,239 - Psest_2604 0.37 +1.2
2,787,352 + Psest_2604 0.52 -1.9
2,787,438 - Psest_2604 0.64 +1.2
2,787,464 - Psest_2604 0.67 +0.5
2,787,464 - Psest_2604 0.67 +0.4
2,787,464 - Psest_2604 0.67 +1.5
2,787,464 - Psest_2604 0.67 +0.9
2,787,494 - Psest_2604 0.72 +2.1
2,787,559 + Psest_2604 0.80 -2.4
2,787,559 + Psest_2604 0.80 -1.8
2,787,560 - Psest_2604 0.80 +0.9
2,787,560 - Psest_2604 0.80 +0.6
2,787,560 - Psest_2604 0.80 +0.2
2,787,771 + +1.2
2,787,771 + +1.6
2,787,772 - +1.4
2,787,772 - +1.5
2,787,772 - +2.2
2,787,772 - +1.0
2,787,772 - +1.1
2,787,772 - +1.9
2,787,791 - +0.4
2,787,937 + Psest_2605 0.34 +0.1
2,787,977 - Psest_2605 0.42 -0.0
2,788,253 - +0.8
2,788,345 + +1.5
2,788,346 - +1.3
2,788,363 - +0.7
2,788,363 - +1.7
2,788,539 + Psest_2606 0.16 +1.1
2,788,540 - Psest_2606 0.16 +2.1
2,788,540 - Psest_2606 0.16 +0.5
2,788,540 - Psest_2606 0.16 +1.3
2,788,621 + Psest_2606 0.22 -0.6
2,788,621 + Psest_2606 0.22 -0.0
2,788,621 + Psest_2606 0.22 +0.0
2,788,622 - Psest_2606 0.22 +1.6
2,788,622 - Psest_2606 0.22 +0.4
2,788,622 - Psest_2606 0.22 -0.0
2,788,622 - Psest_2606 0.22 +0.5
2,788,622 - Psest_2606 0.22 -0.6
2,788,622 - Psest_2606 0.22 +0.4
2,788,632 - Psest_2606 0.23 +1.1

Or see this region's nucleotide sequence