Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2603

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2601 and Psest_2602 overlap by 32 nucleotidesPsest_2602 and Psest_2603 are separated by 51 nucleotidesPsest_2603 and Psest_2604 are separated by 25 nucleotidesPsest_2604 and Psest_2605 are separated by 57 nucleotides Psest_2601: Psest_2601 - Membrane protein involved in the export of O-antigen and teichoic acid, at 2,782,208 to 2,783,770 _2601 Psest_2602: Psest_2602 - Glycosyltransferases involved in cell wall biogenesis, at 2,783,739 to 2,784,671 _2602 Psest_2603: Psest_2603 - capsular exopolysaccharide family, at 2,784,723 to 2,786,936 _2603 Psest_2604: Psest_2604 - WbqC-like protein family., at 2,786,962 to 2,787,705 _2604 Psest_2605: Psest_2605 - transcriptional activator RfaH, at 2,787,763 to 2,788,272 _2605 Position (kb) 2784 2785 2786 2787Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2783.820 kb on + strandat 2783.820 kb on + strandat 2783.820 kb on + strandat 2783.820 kb on + strandat 2783.820 kb on + strandat 2783.821 kb on - strandat 2783.821 kb on - strandat 2783.982 kb on + strand, within Psest_2602at 2783.982 kb on + strand, within Psest_2602at 2784.054 kb on + strand, within Psest_2602at 2784.054 kb on + strand, within Psest_2602at 2784.054 kb on + strand, within Psest_2602at 2784.054 kb on + strand, within Psest_2602at 2784.054 kb on + strand, within Psest_2602at 2784.054 kb on + strand, within Psest_2602at 2784.055 kb on - strand, within Psest_2602at 2784.055 kb on - strand, within Psest_2602at 2784.055 kb on - strand, within Psest_2602at 2784.142 kb on - strand, within Psest_2602at 2784.153 kb on + strand, within Psest_2602at 2784.153 kb on + strand, within Psest_2602at 2784.484 kb on - strand, within Psest_2602at 2784.501 kb on + strand, within Psest_2602at 2784.501 kb on + strand, within Psest_2602at 2784.501 kb on + strand, within Psest_2602at 2784.502 kb on - strand, within Psest_2602at 2784.502 kb on - strand, within Psest_2602at 2784.502 kb on - strand, within Psest_2602at 2784.529 kb on - strand, within Psest_2602at 2784.534 kb on + strand, within Psest_2602at 2784.534 kb on + strand, within Psest_2602at 2784.753 kb on + strandat 2784.753 kb on + strandat 2784.754 kb on - strandat 2784.802 kb on - strandat 2784.861 kb on + strandat 2784.861 kb on + strandat 2784.861 kb on + strandat 2784.861 kb on + strandat 2784.861 kb on + strandat 2784.862 kb on - strandat 2784.862 kb on - strandat 2784.862 kb on - strandat 2784.862 kb on - strandat 2784.862 kb on - strandat 2784.862 kb on - strandat 2784.862 kb on - strandat 2784.886 kb on - strandat 2784.886 kb on - strandat 2785.047 kb on + strand, within Psest_2603at 2785.047 kb on + strand, within Psest_2603at 2785.047 kb on + strand, within Psest_2603at 2785.048 kb on - strand, within Psest_2603at 2785.048 kb on - strand, within Psest_2603at 2785.048 kb on - strand, within Psest_2603at 2785.151 kb on + strand, within Psest_2603at 2785.152 kb on - strand, within Psest_2603at 2785.158 kb on + strand, within Psest_2603at 2785.158 kb on + strand, within Psest_2603at 2785.159 kb on - strand, within Psest_2603at 2785.159 kb on - strand, within Psest_2603at 2785.159 kb on - strand, within Psest_2603at 2785.212 kb on + strand, within Psest_2603at 2785.212 kb on + strand, within Psest_2603at 2785.213 kb on - strand, within Psest_2603at 2785.213 kb on - strand, within Psest_2603at 2785.213 kb on - strand, within Psest_2603at 2785.416 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.467 kb on + strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.468 kb on - strand, within Psest_2603at 2785.510 kb on + strand, within Psest_2603at 2785.511 kb on - strand, within Psest_2603at 2785.511 kb on - strand, within Psest_2603at 2785.511 kb on - strand, within Psest_2603at 2785.533 kb on + strand, within Psest_2603at 2785.534 kb on - strand, within Psest_2603at 2785.534 kb on - strand, within Psest_2603at 2785.654 kb on - strand, within Psest_2603at 2785.654 kb on - strand, within Psest_2603at 2785.765 kb on - strand, within Psest_2603at 2785.776 kb on + strand, within Psest_2603at 2785.776 kb on + strand, within Psest_2603at 2785.776 kb on + strand, within Psest_2603at 2785.798 kb on - strand, within Psest_2603at 2785.849 kb on + strand, within Psest_2603at 2785.850 kb on - strand, within Psest_2603at 2785.850 kb on - strand, within Psest_2603at 2785.850 kb on - strand, within Psest_2603at 2785.932 kb on + strand, within Psest_2603at 2785.933 kb on - strand, within Psest_2603at 2786.016 kb on + strand, within Psest_2603at 2786.016 kb on + strand, within Psest_2603at 2786.127 kb on + strand, within Psest_2603at 2786.178 kb on + strand, within Psest_2603at 2786.179 kb on - strand, within Psest_2603at 2786.674 kb on - strand, within Psest_2603at 2786.910 kb on + strandat 2786.910 kb on + strandat 2786.910 kb on + strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.911 kb on - strandat 2786.916 kb on + strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.917 kb on - strandat 2786.992 kb on + strandat 2786.993 kb on - strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.996 kb on + strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2786.997 kb on - strandat 2787.005 kb on - strandat 2787.005 kb on - strandat 2787.013 kb on + strandat 2787.067 kb on + strand, within Psest_2604at 2787.067 kb on + strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.068 kb on - strand, within Psest_2604at 2787.239 kb on - strand, within Psest_2604at 2787.239 kb on - strand, within Psest_2604at 2787.352 kb on + strand, within Psest_2604at 2787.438 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.464 kb on - strand, within Psest_2604at 2787.494 kb on - strand, within Psest_2604at 2787.559 kb on + strand, within Psest_2604at 2787.559 kb on + strand, within Psest_2604at 2787.560 kb on - strand, within Psest_2604at 2787.560 kb on - strand, within Psest_2604at 2787.560 kb on - strand, within Psest_2604at 2787.771 kb on + strandat 2787.771 kb on + strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.772 kb on - strandat 2787.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,783,820 + +0.7
2,783,820 + -0.1
2,783,820 + +0.7
2,783,820 + +0.4
2,783,820 + +1.7
2,783,821 - +1.2
2,783,821 - +1.0
2,783,982 + Psest_2602 0.26 -1.2
2,783,982 + Psest_2602 0.26 -0.0
2,784,054 + Psest_2602 0.34 -2.8
2,784,054 + Psest_2602 0.34 -0.8
2,784,054 + Psest_2602 0.34 -2.0
2,784,054 + Psest_2602 0.34 -0.3
2,784,054 + Psest_2602 0.34 -0.2
2,784,054 + Psest_2602 0.34 -2.0
2,784,055 - Psest_2602 0.34 +1.1
2,784,055 - Psest_2602 0.34 +1.2
2,784,055 - Psest_2602 0.34 +1.4
2,784,142 - Psest_2602 0.43 +0.5
2,784,153 + Psest_2602 0.44 -1.8
2,784,153 + Psest_2602 0.44 +0.3
2,784,484 - Psest_2602 0.80 +0.5
2,784,501 + Psest_2602 0.82 -1.1
2,784,501 + Psest_2602 0.82 -2.5
2,784,501 + Psest_2602 0.82 -1.0
2,784,502 - Psest_2602 0.82 +0.1
2,784,502 - Psest_2602 0.82 +0.9
2,784,502 - Psest_2602 0.82 +0.5
2,784,529 - Psest_2602 0.85 +2.0
2,784,534 + Psest_2602 0.85 -1.8
2,784,534 + Psest_2602 0.85 -1.0
2,784,753 + -0.3
2,784,753 + +0.7
2,784,754 - +0.5
2,784,802 - +1.7
2,784,861 + +0.4
2,784,861 + -0.0
2,784,861 + -0.9
2,784,861 + -0.7
2,784,861 + -0.4
2,784,862 - +0.8
2,784,862 - +1.1
2,784,862 - +1.3
2,784,862 - +1.0
2,784,862 - +1.0
2,784,862 - +1.1
2,784,862 - +0.6
2,784,886 - +1.7
2,784,886 - +2.3
2,785,047 + Psest_2603 0.15 -1.4
2,785,047 + Psest_2603 0.15 +0.0
2,785,047 + Psest_2603 0.15 +1.6
2,785,048 - Psest_2603 0.15 +1.7
2,785,048 - Psest_2603 0.15 +1.1
2,785,048 - Psest_2603 0.15 -0.3
2,785,151 + Psest_2603 0.19 -0.2
2,785,152 - Psest_2603 0.19 +1.7
2,785,158 + Psest_2603 0.20 -0.0
2,785,158 + Psest_2603 0.20 -0.2
2,785,159 - Psest_2603 0.20 +2.1
2,785,159 - Psest_2603 0.20 +0.6
2,785,159 - Psest_2603 0.20 +0.5
2,785,212 + Psest_2603 0.22 -0.8
2,785,212 + Psest_2603 0.22 -2.0
2,785,213 - Psest_2603 0.22 +0.5
2,785,213 - Psest_2603 0.22 +1.6
2,785,213 - Psest_2603 0.22 +1.5
2,785,416 + Psest_2603 0.31 +0.2
2,785,467 + Psest_2603 0.34 +2.0
2,785,467 + Psest_2603 0.34 -0.6
2,785,467 + Psest_2603 0.34 +0.7
2,785,467 + Psest_2603 0.34 -0.1
2,785,467 + Psest_2603 0.34 -0.5
2,785,467 + Psest_2603 0.34 -0.2
2,785,467 + Psest_2603 0.34 -0.5
2,785,467 + Psest_2603 0.34 -2.2
2,785,467 + Psest_2603 0.34 -0.1
2,785,467 + Psest_2603 0.34 +0.5
2,785,467 + Psest_2603 0.34 -0.3
2,785,467 + Psest_2603 0.34 -0.5
2,785,468 - Psest_2603 0.34 +1.5
2,785,468 - Psest_2603 0.34 +0.8
2,785,468 - Psest_2603 0.34 +0.3
2,785,468 - Psest_2603 0.34 +0.6
2,785,468 - Psest_2603 0.34 +1.1
2,785,468 - Psest_2603 0.34 +1.9
2,785,468 - Psest_2603 0.34 +1.6
2,785,468 - Psest_2603 0.34 +0.9
2,785,468 - Psest_2603 0.34 -0.1
2,785,468 - Psest_2603 0.34 +1.0
2,785,468 - Psest_2603 0.34 +0.4
2,785,468 - Psest_2603 0.34 +1.0
2,785,468 - Psest_2603 0.34 +1.0
2,785,468 - Psest_2603 0.34 +0.8
2,785,468 - Psest_2603 0.34 +1.6
2,785,468 - Psest_2603 0.34 +1.3
2,785,468 - Psest_2603 0.34 +1.2
2,785,468 - Psest_2603 0.34 -0.7
2,785,468 - Psest_2603 0.34 +0.4
2,785,468 - Psest_2603 0.34 +1.5
2,785,468 - Psest_2603 0.34 +0.0
2,785,468 - Psest_2603 0.34 -0.3
2,785,468 - Psest_2603 0.34 +1.1
2,785,468 - Psest_2603 0.34 +1.0
2,785,468 - Psest_2603 0.34 +0.8
2,785,510 + Psest_2603 0.36 -0.6
2,785,511 - Psest_2603 0.36 -0.8
2,785,511 - Psest_2603 0.36 +1.0
2,785,511 - Psest_2603 0.36 +0.7
2,785,533 + Psest_2603 0.37 -1.6
2,785,534 - Psest_2603 0.37 +0.3
2,785,534 - Psest_2603 0.37 +1.6
2,785,654 - Psest_2603 0.42 +1.1
2,785,654 - Psest_2603 0.42 +1.0
2,785,765 - Psest_2603 0.47 +1.0
2,785,776 + Psest_2603 0.48 -1.7
2,785,776 + Psest_2603 0.48 -0.6
2,785,776 + Psest_2603 0.48 -0.4
2,785,798 - Psest_2603 0.49 +0.6
2,785,849 + Psest_2603 0.51 -0.3
2,785,850 - Psest_2603 0.51 +1.2
2,785,850 - Psest_2603 0.51 -0.7
2,785,850 - Psest_2603 0.51 +0.2
2,785,932 + Psest_2603 0.55 -0.3
2,785,933 - Psest_2603 0.55 +1.9
2,786,016 + Psest_2603 0.58 -2.3
2,786,016 + Psest_2603 0.58 -0.7
2,786,127 + Psest_2603 0.63 -1.7
2,786,178 + Psest_2603 0.66 -1.0
2,786,179 - Psest_2603 0.66 +0.8
2,786,674 - Psest_2603 0.88 +1.3
2,786,910 + -1.8
2,786,910 + -3.3
2,786,910 + -2.5
2,786,911 - +0.4
2,786,911 - +0.8
2,786,911 - +1.0
2,786,911 - +1.1
2,786,911 - +1.2
2,786,911 - -0.2
2,786,911 - +0.5
2,786,911 - +1.4
2,786,916 + -1.8
2,786,917 - -0.8
2,786,917 - +0.4
2,786,917 - +0.7
2,786,917 - +1.1
2,786,917 - +0.6
2,786,917 - +0.5
2,786,917 - +0.8
2,786,917 - +0.5
2,786,917 - +0.7
2,786,917 - +0.7
2,786,917 - +0.8
2,786,917 - +0.7
2,786,917 - +0.6
2,786,917 - -0.3
2,786,992 + -0.9
2,786,993 - +0.4
2,786,996 + -0.2
2,786,996 + -0.7
2,786,996 + -0.2
2,786,996 + -0.8
2,786,996 + -2.6
2,786,996 + -0.3
2,786,997 - +1.0
2,786,997 - +0.9
2,786,997 - +1.0
2,786,997 - +1.8
2,786,997 - +0.3
2,786,997 - +0.8
2,786,997 - +1.3
2,787,005 - +1.3
2,787,005 - +0.7
2,787,013 + -1.1
2,787,067 + Psest_2604 0.14 -1.5
2,787,067 + Psest_2604 0.14 -1.0
2,787,068 - Psest_2604 0.14 +1.4
2,787,068 - Psest_2604 0.14 +0.8
2,787,068 - Psest_2604 0.14 +2.0
2,787,068 - Psest_2604 0.14 +1.3
2,787,068 - Psest_2604 0.14 +1.0
2,787,068 - Psest_2604 0.14 +0.8
2,787,239 - Psest_2604 0.37 +1.1
2,787,239 - Psest_2604 0.37 +1.2
2,787,352 + Psest_2604 0.52 -1.9
2,787,438 - Psest_2604 0.64 +1.2
2,787,464 - Psest_2604 0.67 +0.5
2,787,464 - Psest_2604 0.67 +0.4
2,787,464 - Psest_2604 0.67 +1.5
2,787,464 - Psest_2604 0.67 +0.9
2,787,494 - Psest_2604 0.72 +2.1
2,787,559 + Psest_2604 0.80 -2.4
2,787,559 + Psest_2604 0.80 -1.8
2,787,560 - Psest_2604 0.80 +0.9
2,787,560 - Psest_2604 0.80 +0.6
2,787,560 - Psest_2604 0.80 +0.2
2,787,771 + +1.2
2,787,771 + +1.6
2,787,772 - +1.4
2,787,772 - +1.5
2,787,772 - +2.2
2,787,772 - +1.0
2,787,772 - +1.1
2,787,772 - +1.9
2,787,791 - +0.4

Or see this region's nucleotide sequence