Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0248

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0247 and Psest_0248 are separated by 129 nucleotidesPsest_0248 and Psest_0249 are separated by 175 nucleotides Psest_0247: Psest_0247 - NAD-dependent aldehyde dehydrogenases, at 257,716 to 259,128 _0247 Psest_0248: Psest_0248 - Transcriptional regulator, at 259,258 to 259,902 _0248 Psest_0249: Psest_0249 - UDP-N-acetylglucosamine 2-epimerase, at 260,078 to 261,268 _0249 Position (kb) 259 260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.356 kb on + strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.357 kb on - strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.592 kb on + strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.593 kb on - strand, within Psest_0247at 258.605 kb on - strand, within Psest_0247at 258.631 kb on + strand, within Psest_0247at 258.631 kb on + strand, within Psest_0247at 258.632 kb on - strand, within Psest_0247at 258.632 kb on - strand, within Psest_0247at 258.746 kb on + strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.747 kb on - strand, within Psest_0247at 258.755 kb on + strand, within Psest_0247at 258.756 kb on - strand, within Psest_0247at 258.797 kb on + strand, within Psest_0247at 258.798 kb on - strand, within Psest_0247at 258.798 kb on - strand, within Psest_0247at 259.163 kb on - strandat 259.198 kb on + strandat 259.198 kb on + strandat 259.198 kb on + strandat 259.198 kb on + strandat 259.216 kb on + strandat 259.216 kb on + strandat 259.217 kb on - strandat 259.217 kb on - strandat 259.387 kb on + strand, within Psest_0248at 259.387 kb on + strand, within Psest_0248at 259.387 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.390 kb on + strand, within Psest_0248at 259.391 kb on - strand, within Psest_0248at 259.438 kb on + strand, within Psest_0248at 259.510 kb on + strand, within Psest_0248at 259.510 kb on + strand, within Psest_0248at 259.511 kb on - strand, within Psest_0248at 259.511 kb on - strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.651 kb on + strand, within Psest_0248at 259.652 kb on - strand, within Psest_0248at 259.715 kb on + strand, within Psest_0248at 259.715 kb on + strand, within Psest_0248at 259.715 kb on + strand, within Psest_0248at 259.716 kb on - strand, within Psest_0248at 259.807 kb on + strand, within Psest_0248at 259.807 kb on + strand, within Psest_0248at 259.807 kb on + strand, within Psest_0248at 259.808 kb on - strand, within Psest_0248at 259.862 kb on + strandat 259.863 kb on - strandat 259.863 kb on - strandat 259.863 kb on - strandat 259.863 kb on - strandat 259.868 kb on + strandat 259.869 kb on - strandat 259.869 kb on - strandat 259.869 kb on - strandat 259.936 kb on - strandat 260.105 kb on - strandat 260.173 kb on + strandat 260.356 kb on - strand, within Psest_0249at 260.376 kb on + strand, within Psest_0249at 260.376 kb on + strand, within Psest_0249at 260.376 kb on + strand, within Psest_0249at 260.377 kb on - strand, within Psest_0249at 260.377 kb on - strand, within Psest_0249at 260.472 kb on + strand, within Psest_0249at 260.510 kb on + strand, within Psest_0249at 260.677 kb on + strand, within Psest_0249at 260.677 kb on + strand, within Psest_0249at 260.677 kb on + strand, within Psest_0249at 260.678 kb on - strand, within Psest_0249at 260.678 kb on - strand, within Psest_0249at 260.862 kb on + strand, within Psest_0249at 260.862 kb on + strand, within Psest_0249at 260.863 kb on - strand, within Psest_0249at 260.894 kb on + strand, within Psest_0249

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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258,356 + Psest_0247 0.45 -0.0
258,356 + Psest_0247 0.45 +0.9
258,356 + Psest_0247 0.45 -0.2
258,356 + Psest_0247 0.45 -0.6
258,356 + Psest_0247 0.45 -0.2
258,356 + Psest_0247 0.45 -0.6
258,356 + Psest_0247 0.45 -0.9
258,356 + Psest_0247 0.45 -0.7
258,356 + Psest_0247 0.45 -0.2
258,356 + Psest_0247 0.45 -1.0
258,356 + Psest_0247 0.45 +1.1
258,356 + Psest_0247 0.45 -0.3
258,356 + Psest_0247 0.45 -0.4
258,356 + Psest_0247 0.45 -0.1
258,357 - Psest_0247 0.45 -0.0
258,357 - Psest_0247 0.45 +0.6
258,357 - Psest_0247 0.45 +1.7
258,357 - Psest_0247 0.45 +0.6
258,357 - Psest_0247 0.45 -0.7
258,357 - Psest_0247 0.45 +1.5
258,357 - Psest_0247 0.45 -0.5
258,592 + Psest_0247 0.62 +0.7
258,592 + Psest_0247 0.62 -2.4
258,592 + Psest_0247 0.62 -0.6
258,592 + Psest_0247 0.62 +0.8
258,592 + Psest_0247 0.62 -0.6
258,592 + Psest_0247 0.62 -0.3
258,592 + Psest_0247 0.62 -0.1
258,593 - Psest_0247 0.62 -0.5
258,593 - Psest_0247 0.62 +0.1
258,593 - Psest_0247 0.62 -1.3
258,593 - Psest_0247 0.62 +0.0
258,593 - Psest_0247 0.62 -1.5
258,593 - Psest_0247 0.62 +0.2
258,593 - Psest_0247 0.62 -0.2
258,593 - Psest_0247 0.62 +0.7
258,605 - Psest_0247 0.63 -0.7
258,631 + Psest_0247 0.65 +0.7
258,631 + Psest_0247 0.65 -0.4
258,632 - Psest_0247 0.65 +0.1
258,632 - Psest_0247 0.65 -0.2
258,746 + Psest_0247 0.73 -0.3
258,747 - Psest_0247 0.73 -1.3
258,747 - Psest_0247 0.73 -0.0
258,747 - Psest_0247 0.73 +0.3
258,747 - Psest_0247 0.73 +0.4
258,755 + Psest_0247 0.74 -0.3
258,756 - Psest_0247 0.74 +1.8
258,797 + Psest_0247 0.77 -0.4
258,798 - Psest_0247 0.77 +0.1
258,798 - Psest_0247 0.77 -1.0
259,163 - -0.3
259,198 + -0.6
259,198 + +0.7
259,198 + +1.2
259,198 + +0.0
259,216 + -0.5
259,216 + +0.3
259,217 - -1.5
259,217 - -3.8
259,387 + Psest_0248 0.20 -0.9
259,387 + Psest_0248 0.20 -3.0
259,387 + Psest_0248 0.20 -1.3
259,390 + Psest_0248 0.20 -2.3
259,390 + Psest_0248 0.20 -3.5
259,390 + Psest_0248 0.20 -0.1
259,390 + Psest_0248 0.20 -1.3
259,390 + Psest_0248 0.20 -2.4
259,391 - Psest_0248 0.21 -1.0
259,438 + Psest_0248 0.28 -1.0
259,510 + Psest_0248 0.39 -0.0
259,510 + Psest_0248 0.39 -1.3
259,511 - Psest_0248 0.39 -3.4
259,511 - Psest_0248 0.39 -1.9
259,651 + Psest_0248 0.61 -1.4
259,651 + Psest_0248 0.61 -3.1
259,651 + Psest_0248 0.61 +0.5
259,651 + Psest_0248 0.61 -1.2
259,651 + Psest_0248 0.61 -2.7
259,652 - Psest_0248 0.61 -2.9
259,715 + Psest_0248 0.71 -1.5
259,715 + Psest_0248 0.71 -1.6
259,715 + Psest_0248 0.71 -2.9
259,716 - Psest_0248 0.71 -2.6
259,807 + Psest_0248 0.85 -1.8
259,807 + Psest_0248 0.85 -0.4
259,807 + Psest_0248 0.85 +2.9
259,808 - Psest_0248 0.85 -2.3
259,862 + +0.1
259,863 - -1.9
259,863 - -1.1
259,863 - -1.7
259,863 - -2.0
259,868 + +0.1
259,869 - -3.3
259,869 - -2.9
259,869 - -2.2
259,936 - -0.5
260,105 - -1.0
260,173 + +0.1
260,356 - Psest_0249 0.23 -0.3
260,376 + Psest_0249 0.25 +0.1
260,376 + Psest_0249 0.25 +0.6
260,376 + Psest_0249 0.25 +1.0
260,377 - Psest_0249 0.25 +0.6
260,377 - Psest_0249 0.25 +1.7
260,472 + Psest_0249 0.33 +0.4
260,510 + Psest_0249 0.36 -0.5
260,677 + Psest_0249 0.50 +0.7
260,677 + Psest_0249 0.50 +0.1
260,677 + Psest_0249 0.50 +0.9
260,678 - Psest_0249 0.50 -0.8
260,678 - Psest_0249 0.50 +0.5
260,862 + Psest_0249 0.66 +0.3
260,862 + Psest_0249 0.66 -0.2
260,863 - Psest_0249 0.66 +1.1
260,894 + Psest_0249 0.69 +0.4

Or see this region's nucleotide sequence