Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1574

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1572 and Psest_1573 overlap by 4 nucleotidesPsest_1573 and Psest_1574 are separated by 132 nucleotidesPsest_1574 and Psest_1575 are separated by 100 nucleotides Psest_1572: Psest_1572 - Putative effector of murein hydrolase LrgA, at 1,675,208 to 1,675,573 _1572 Psest_1573: Psest_1573 - Putative effector of murein hydrolase, at 1,675,570 to 1,676,280 _1573 Psest_1574: Psest_1574 - phenazine biosynthesis protein PhzF family, at 1,676,413 to 1,677,204 _1574 Psest_1575: Psest_1575 - Beta-glucosidase-related glycosidases, at 1,677,305 to 1,679,596 _1575 Position (kb) 1676 1677 1678Strain fitness (log2 ratio) -1 0 1at 1675.759 kb on + strand, within Psest_1573at 1675.760 kb on - strand, within Psest_1573at 1676.146 kb on + strand, within Psest_1573at 1676.318 kb on + strandat 1676.945 kb on + strand, within Psest_1574at 1676.946 kb on - strand, within Psest_1574at 1676.946 kb on - strand, within Psest_1574at 1676.946 kb on - strand, within Psest_1574at 1676.989 kb on + strand, within Psest_1574at 1676.990 kb on - strand, within Psest_1574at 1676.990 kb on - strand, within Psest_1574at 1677.203 kb on - strandat 1677.210 kb on + strandat 1677.210 kb on + strandat 1677.210 kb on + strandat 1677.210 kb on + strandat 1677.283 kb on + strandat 1677.283 kb on + strandat 1677.283 kb on + strandat 1677.284 kb on - strandat 1677.424 kb on + strandat 1677.424 kb on + strandat 1677.425 kb on - strandat 1677.520 kb on + strandat 1677.617 kb on + strand, within Psest_1575at 1677.617 kb on + strand, within Psest_1575at 1677.618 kb on - strand, within Psest_1575at 1677.953 kb on + strand, within Psest_1575at 1677.995 kb on + strand, within Psest_1575at 1677.995 kb on + strand, within Psest_1575at 1677.996 kb on - strand, within Psest_1575

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,675,759 + Psest_1573 0.27 -0.2
1,675,760 - Psest_1573 0.27 +1.0
1,676,146 + Psest_1573 0.81 -0.5
1,676,318 + -1.0
1,676,945 + Psest_1574 0.67 +1.6
1,676,946 - Psest_1574 0.67 -0.4
1,676,946 - Psest_1574 0.67 -0.5
1,676,946 - Psest_1574 0.67 -0.6
1,676,989 + Psest_1574 0.73 +1.7
1,676,990 - Psest_1574 0.73 +1.6
1,676,990 - Psest_1574 0.73 -1.6
1,677,203 - +1.1
1,677,210 + -0.1
1,677,210 + -0.4
1,677,210 + -0.6
1,677,210 + -1.1
1,677,283 + -0.2
1,677,283 + +0.9
1,677,283 + -0.5
1,677,284 - -0.6
1,677,424 + -0.4
1,677,424 + +0.0
1,677,425 - -0.9
1,677,520 + -0.1
1,677,617 + Psest_1575 0.14 -0.3
1,677,617 + Psest_1575 0.14 -0.5
1,677,618 - Psest_1575 0.14 -0.0
1,677,953 + Psest_1575 0.28 -1.0
1,677,995 + Psest_1575 0.30 -1.1
1,677,995 + Psest_1575 0.30 +1.1
1,677,996 - Psest_1575 0.30 -0.2

Or see this region's nucleotide sequence