Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1566

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1565 and Psest_1566 are separated by 5 nucleotidesPsest_1566 and Psest_1567 are separated by 33 nucleotidesPsest_1567 and Psest_1568 are separated by 135 nucleotides Psest_1565: Psest_1565 - RND family efflux transporter, MFP subunit, at 1,664,716 to 1,665,816 _1565 Psest_1566: Psest_1566 - Cation/multidrug efflux pump, at 1,665,822 to 1,668,902 _1566 Psest_1567: Psest_1567 - Transcriptional regulator, at 1,668,936 to 1,669,496 _1567 Psest_1568: Psest_1568 - hypothetical protein, at 1,669,632 to 1,670,543 _1568 Position (kb) 1665 1666 1667 1668 1669Strain fitness (log2 ratio) -2 -1 0 1 2at 1664.908 kb on - strand, within Psest_1565at 1664.909 kb on + strand, within Psest_1565at 1664.909 kb on + strand, within Psest_1565at 1664.910 kb on - strand, within Psest_1565at 1664.910 kb on - strand, within Psest_1565at 1665.079 kb on + strand, within Psest_1565at 1665.279 kb on - strand, within Psest_1565at 1665.418 kb on + strand, within Psest_1565at 1665.418 kb on + strand, within Psest_1565at 1665.419 kb on - strand, within Psest_1565at 1665.472 kb on + strand, within Psest_1565at 1665.473 kb on - strand, within Psest_1565at 1665.473 kb on - strand, within Psest_1565at 1665.636 kb on + strand, within Psest_1565at 1665.637 kb on - strand, within Psest_1565at 1665.912 kb on + strandat 1666.056 kb on + strandat 1666.254 kb on + strand, within Psest_1566at 1666.254 kb on + strand, within Psest_1566at 1666.254 kb on + strand, within Psest_1566at 1666.254 kb on + strand, within Psest_1566at 1666.255 kb on - strand, within Psest_1566at 1666.255 kb on - strand, within Psest_1566at 1666.281 kb on + strand, within Psest_1566at 1666.282 kb on - strand, within Psest_1566at 1666.299 kb on + strand, within Psest_1566at 1666.609 kb on + strand, within Psest_1566at 1666.609 kb on + strand, within Psest_1566at 1666.610 kb on - strand, within Psest_1566at 1666.959 kb on + strand, within Psest_1566at 1666.959 kb on + strand, within Psest_1566at 1666.960 kb on - strand, within Psest_1566at 1666.960 kb on - strand, within Psest_1566at 1667.002 kb on + strand, within Psest_1566at 1667.003 kb on - strand, within Psest_1566at 1667.199 kb on + strand, within Psest_1566at 1667.199 kb on + strand, within Psest_1566at 1667.199 kb on + strand, within Psest_1566at 1667.199 kb on + strand, within Psest_1566at 1667.356 kb on - strand, within Psest_1566at 1667.371 kb on - strand, within Psest_1566at 1667.619 kb on + strand, within Psest_1566at 1667.619 kb on + strand, within Psest_1566at 1667.619 kb on + strand, within Psest_1566at 1667.619 kb on + strand, within Psest_1566at 1667.619 kb on + strand, within Psest_1566at 1667.619 kb on + strand, within Psest_1566at 1667.619 kb on + strand, within Psest_1566at 1667.620 kb on - strand, within Psest_1566at 1667.620 kb on - strand, within Psest_1566at 1667.620 kb on - strand, within Psest_1566at 1667.620 kb on - strand, within Psest_1566at 1667.620 kb on - strand, within Psest_1566at 1667.655 kb on + strand, within Psest_1566at 1667.656 kb on - strand, within Psest_1566at 1668.210 kb on + strand, within Psest_1566at 1668.771 kb on - strandat 1668.853 kb on + strandat 1668.855 kb on + strandat 1668.856 kb on - strandat 1668.856 kb on - strandat 1668.910 kb on + strandat 1668.910 kb on + strandat 1668.910 kb on + strandat 1668.911 kb on - strandat 1668.911 kb on - strandat 1668.911 kb on - strandat 1668.912 kb on + strandat 1668.912 kb on + strandat 1668.913 kb on - strandat 1669.042 kb on + strand, within Psest_1567at 1669.074 kb on - strand, within Psest_1567at 1669.372 kb on + strand, within Psest_1567at 1669.373 kb on - strand, within Psest_1567at 1669.373 kb on - strand, within Psest_1567at 1669.628 kb on + strandat 1669.628 kb on + strandat 1669.628 kb on + strandat 1669.629 kb on - strandat 1669.629 kb on - strandat 1669.657 kb on - strandat 1669.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,664,908 - Psest_1565 0.17 -0.4
1,664,909 + Psest_1565 0.18 +0.8
1,664,909 + Psest_1565 0.18 +0.7
1,664,910 - Psest_1565 0.18 +0.5
1,664,910 - Psest_1565 0.18 +0.1
1,665,079 + Psest_1565 0.33 +0.6
1,665,279 - Psest_1565 0.51 +0.3
1,665,418 + Psest_1565 0.64 +0.4
1,665,418 + Psest_1565 0.64 -2.4
1,665,419 - Psest_1565 0.64 +0.0
1,665,472 + Psest_1565 0.69 -0.2
1,665,473 - Psest_1565 0.69 -0.9
1,665,473 - Psest_1565 0.69 +0.1
1,665,636 + Psest_1565 0.84 +1.3
1,665,637 - Psest_1565 0.84 +1.3
1,665,912 + +1.1
1,666,056 + +0.4
1,666,254 + Psest_1566 0.14 +0.0
1,666,254 + Psest_1566 0.14 +0.9
1,666,254 + Psest_1566 0.14 +0.8
1,666,254 + Psest_1566 0.14 +1.3
1,666,255 - Psest_1566 0.14 +0.1
1,666,255 - Psest_1566 0.14 -0.6
1,666,281 + Psest_1566 0.15 +0.5
1,666,282 - Psest_1566 0.15 -0.5
1,666,299 + Psest_1566 0.15 +0.3
1,666,609 + Psest_1566 0.26 +1.3
1,666,609 + Psest_1566 0.26 +0.4
1,666,610 - Psest_1566 0.26 +0.8
1,666,959 + Psest_1566 0.37 +1.6
1,666,959 + Psest_1566 0.37 -0.9
1,666,960 - Psest_1566 0.37 +0.7
1,666,960 - Psest_1566 0.37 +0.8
1,667,002 + Psest_1566 0.38 -0.1
1,667,003 - Psest_1566 0.38 +1.3
1,667,199 + Psest_1566 0.45 +0.3
1,667,199 + Psest_1566 0.45 +1.1
1,667,199 + Psest_1566 0.45 +0.4
1,667,199 + Psest_1566 0.45 +0.5
1,667,356 - Psest_1566 0.50 +0.4
1,667,371 - Psest_1566 0.50 +1.0
1,667,619 + Psest_1566 0.58 +0.7
1,667,619 + Psest_1566 0.58 +0.5
1,667,619 + Psest_1566 0.58 +1.4
1,667,619 + Psest_1566 0.58 +0.5
1,667,619 + Psest_1566 0.58 -0.6
1,667,619 + Psest_1566 0.58 -0.0
1,667,619 + Psest_1566 0.58 -1.5
1,667,620 - Psest_1566 0.58 -0.3
1,667,620 - Psest_1566 0.58 +0.0
1,667,620 - Psest_1566 0.58 +1.6
1,667,620 - Psest_1566 0.58 +0.2
1,667,620 - Psest_1566 0.58 +0.3
1,667,655 + Psest_1566 0.59 +0.6
1,667,656 - Psest_1566 0.60 -1.4
1,668,210 + Psest_1566 0.78 +0.4
1,668,771 - +2.0
1,668,853 + -0.2
1,668,855 + +0.3
1,668,856 - +0.6
1,668,856 - +1.2
1,668,910 + -0.0
1,668,910 + +1.5
1,668,910 + +0.2
1,668,911 - +0.4
1,668,911 - +1.7
1,668,911 - -0.1
1,668,912 + +0.1
1,668,912 + -1.3
1,668,913 - -0.1
1,669,042 + Psest_1567 0.19 +1.3
1,669,074 - Psest_1567 0.25 +2.1
1,669,372 + Psest_1567 0.78 +1.0
1,669,373 - Psest_1567 0.78 +1.2
1,669,373 - Psest_1567 0.78 +1.4
1,669,628 + -0.6
1,669,628 + -0.2
1,669,628 + -0.4
1,669,629 - -0.8
1,669,629 - +0.7
1,669,657 - +0.2
1,669,673 - -0.1

Or see this region's nucleotide sequence