Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1565 and Psest_1566 are separated by 5 nucleotides Psest_1566 and Psest_1567 are separated by 33 nucleotides Psest_1567 and Psest_1568 are separated by 135 nucleotides
Psest_1565: Psest_1565 - RND family efflux transporter, MFP subunit, at 1,664,716 to 1,665,816
_1565
Psest_1566: Psest_1566 - Cation/multidrug efflux pump, at 1,665,822 to 1,668,902
_1566
Psest_1567: Psest_1567 - Transcriptional regulator, at 1,668,936 to 1,669,496
_1567
Psest_1568: Psest_1568 - hypothetical protein, at 1,669,632 to 1,670,543
_1568
Position (kb)
1665
1666
1667
1668
1669 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1664.908 kb on - strand, within Psest_1565 at 1664.909 kb on + strand, within Psest_1565 at 1664.909 kb on + strand, within Psest_1565 at 1664.910 kb on - strand, within Psest_1565 at 1664.910 kb on - strand, within Psest_1565 at 1665.079 kb on + strand, within Psest_1565 at 1665.279 kb on - strand, within Psest_1565 at 1665.418 kb on + strand, within Psest_1565 at 1665.418 kb on + strand, within Psest_1565 at 1665.419 kb on - strand, within Psest_1565 at 1665.472 kb on + strand, within Psest_1565 at 1665.473 kb on - strand, within Psest_1565 at 1665.473 kb on - strand, within Psest_1565 at 1665.636 kb on + strand, within Psest_1565 at 1665.637 kb on - strand, within Psest_1565 at 1665.912 kb on + strand at 1666.056 kb on + strand at 1666.254 kb on + strand, within Psest_1566 at 1666.254 kb on + strand, within Psest_1566 at 1666.254 kb on + strand, within Psest_1566 at 1666.254 kb on + strand, within Psest_1566 at 1666.255 kb on - strand, within Psest_1566 at 1666.255 kb on - strand, within Psest_1566 at 1666.281 kb on + strand, within Psest_1566 at 1666.282 kb on - strand, within Psest_1566 at 1666.299 kb on + strand, within Psest_1566 at 1666.609 kb on + strand, within Psest_1566 at 1666.609 kb on + strand, within Psest_1566 at 1666.610 kb on - strand, within Psest_1566 at 1666.959 kb on + strand, within Psest_1566 at 1666.959 kb on + strand, within Psest_1566 at 1666.960 kb on - strand, within Psest_1566 at 1666.960 kb on - strand, within Psest_1566 at 1667.002 kb on + strand, within Psest_1566 at 1667.003 kb on - strand, within Psest_1566 at 1667.199 kb on + strand, within Psest_1566 at 1667.199 kb on + strand, within Psest_1566 at 1667.199 kb on + strand, within Psest_1566 at 1667.199 kb on + strand, within Psest_1566 at 1667.356 kb on - strand, within Psest_1566 at 1667.371 kb on - strand, within Psest_1566 at 1667.619 kb on + strand, within Psest_1566 at 1667.619 kb on + strand, within Psest_1566 at 1667.619 kb on + strand, within Psest_1566 at 1667.619 kb on + strand, within Psest_1566 at 1667.619 kb on + strand, within Psest_1566 at 1667.619 kb on + strand, within Psest_1566 at 1667.619 kb on + strand, within Psest_1566 at 1667.620 kb on - strand, within Psest_1566 at 1667.620 kb on - strand, within Psest_1566 at 1667.620 kb on - strand, within Psest_1566 at 1667.620 kb on - strand, within Psest_1566 at 1667.620 kb on - strand, within Psest_1566 at 1667.655 kb on + strand, within Psest_1566 at 1667.656 kb on - strand, within Psest_1566 at 1668.210 kb on + strand, within Psest_1566 at 1668.771 kb on - strand at 1668.853 kb on + strand at 1668.855 kb on + strand at 1668.856 kb on - strand at 1668.856 kb on - strand at 1668.910 kb on + strand at 1668.910 kb on + strand at 1668.910 kb on + strand at 1668.911 kb on - strand at 1668.911 kb on - strand at 1668.911 kb on - strand at 1668.912 kb on + strand at 1668.912 kb on + strand at 1668.913 kb on - strand at 1669.042 kb on + strand, within Psest_1567 at 1669.074 kb on - strand, within Psest_1567 at 1669.372 kb on + strand, within Psest_1567 at 1669.373 kb on - strand, within Psest_1567 at 1669.373 kb on - strand, within Psest_1567 at 1669.628 kb on + strand at 1669.628 kb on + strand at 1669.628 kb on + strand at 1669.629 kb on - strand at 1669.629 kb on - strand at 1669.657 kb on - strand at 1669.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,664,908 - Psest_1565 0.17 -0.4 1,664,909 + Psest_1565 0.18 +0.8 1,664,909 + Psest_1565 0.18 +0.7 1,664,910 - Psest_1565 0.18 +0.5 1,664,910 - Psest_1565 0.18 +0.1 1,665,079 + Psest_1565 0.33 +0.6 1,665,279 - Psest_1565 0.51 +0.3 1,665,418 + Psest_1565 0.64 +0.4 1,665,418 + Psest_1565 0.64 -2.4 1,665,419 - Psest_1565 0.64 +0.0 1,665,472 + Psest_1565 0.69 -0.2 1,665,473 - Psest_1565 0.69 -0.9 1,665,473 - Psest_1565 0.69 +0.1 1,665,636 + Psest_1565 0.84 +1.3 1,665,637 - Psest_1565 0.84 +1.3 1,665,912 + +1.1 1,666,056 + +0.4 1,666,254 + Psest_1566 0.14 +0.0 1,666,254 + Psest_1566 0.14 +0.9 1,666,254 + Psest_1566 0.14 +0.8 1,666,254 + Psest_1566 0.14 +1.3 1,666,255 - Psest_1566 0.14 +0.1 1,666,255 - Psest_1566 0.14 -0.6 1,666,281 + Psest_1566 0.15 +0.5 1,666,282 - Psest_1566 0.15 -0.5 1,666,299 + Psest_1566 0.15 +0.3 1,666,609 + Psest_1566 0.26 +1.3 1,666,609 + Psest_1566 0.26 +0.4 1,666,610 - Psest_1566 0.26 +0.8 1,666,959 + Psest_1566 0.37 +1.6 1,666,959 + Psest_1566 0.37 -0.9 1,666,960 - Psest_1566 0.37 +0.7 1,666,960 - Psest_1566 0.37 +0.8 1,667,002 + Psest_1566 0.38 -0.1 1,667,003 - Psest_1566 0.38 +1.3 1,667,199 + Psest_1566 0.45 +0.3 1,667,199 + Psest_1566 0.45 +1.1 1,667,199 + Psest_1566 0.45 +0.4 1,667,199 + Psest_1566 0.45 +0.5 1,667,356 - Psest_1566 0.50 +0.4 1,667,371 - Psest_1566 0.50 +1.0 1,667,619 + Psest_1566 0.58 +0.7 1,667,619 + Psest_1566 0.58 +0.5 1,667,619 + Psest_1566 0.58 +1.4 1,667,619 + Psest_1566 0.58 +0.5 1,667,619 + Psest_1566 0.58 -0.6 1,667,619 + Psest_1566 0.58 -0.0 1,667,619 + Psest_1566 0.58 -1.5 1,667,620 - Psest_1566 0.58 -0.3 1,667,620 - Psest_1566 0.58 +0.0 1,667,620 - Psest_1566 0.58 +1.6 1,667,620 - Psest_1566 0.58 +0.2 1,667,620 - Psest_1566 0.58 +0.3 1,667,655 + Psest_1566 0.59 +0.6 1,667,656 - Psest_1566 0.60 -1.4 1,668,210 + Psest_1566 0.78 +0.4 1,668,771 - +2.0 1,668,853 + -0.2 1,668,855 + +0.3 1,668,856 - +0.6 1,668,856 - +1.2 1,668,910 + -0.0 1,668,910 + +1.5 1,668,910 + +0.2 1,668,911 - +0.4 1,668,911 - +1.7 1,668,911 - -0.1 1,668,912 + +0.1 1,668,912 + -1.3 1,668,913 - -0.1 1,669,042 + Psest_1567 0.19 +1.3 1,669,074 - Psest_1567 0.25 +2.1 1,669,372 + Psest_1567 0.78 +1.0 1,669,373 - Psest_1567 0.78 +1.2 1,669,373 - Psest_1567 0.78 +1.4 1,669,628 + -0.6 1,669,628 + -0.2 1,669,628 + -0.4 1,669,629 - -0.8 1,669,629 - +0.7 1,669,657 - +0.2 1,669,673 - -0.1
Or see this region's nucleotide sequence