Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1539

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1537 and Psest_1538 are separated by 204 nucleotidesPsest_1538 and Psest_1539 are separated by 42 nucleotidesPsest_1539 and Psest_1540 are separated by 120 nucleotides Psest_1537: Psest_1537 - Bacterioferritin-associated ferredoxin, at 1,637,121 to 1,637,339 _1537 Psest_1538: Psest_1538 - Uncharacterized protein conserved in bacteria, at 1,637,544 to 1,638,086 _1538 Psest_1539: Psest_1539 - Mn2+ and Fe2+ transporters of the NRAMP family, at 1,638,129 to 1,639,349 _1539 Psest_1540: Psest_1540 - biotin-dependent carboxylase uncharacterized domain, at 1,639,470 to 1,640,381 _1540 Position (kb) 1638 1639 1640Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1637.146 kb on + strand, within Psest_1537at 1637.172 kb on + strand, within Psest_1537at 1637.172 kb on + strand, within Psest_1537at 1637.172 kb on + strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.335 kb on + strandat 1637.335 kb on + strandat 1637.335 kb on + strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.423 kb on - strandat 1637.423 kb on - strandat 1637.449 kb on + strandat 1637.449 kb on + strandat 1637.450 kb on - strandat 1637.450 kb on - strandat 1637.450 kb on - strandat 1637.450 kb on - strandat 1637.608 kb on - strand, within Psest_1538at 1637.682 kb on + strand, within Psest_1538at 1637.682 kb on + strand, within Psest_1538at 1637.682 kb on + strand, within Psest_1538at 1637.682 kb on + strand, within Psest_1538at 1637.683 kb on - strand, within Psest_1538at 1637.683 kb on - strand, within Psest_1538at 1637.683 kb on - strand, within Psest_1538at 1637.683 kb on - strand, within Psest_1538at 1637.683 kb on - strand, within Psest_1538at 1637.998 kb on + strand, within Psest_1538at 1637.999 kb on - strand, within Psest_1538at 1638.053 kb on - strandat 1638.169 kb on - strandat 1638.202 kb on - strandat 1638.276 kb on + strand, within Psest_1539at 1638.276 kb on + strand, within Psest_1539at 1638.300 kb on + strand, within Psest_1539at 1638.361 kb on + strand, within Psest_1539at 1638.361 kb on + strand, within Psest_1539at 1638.362 kb on - strand, within Psest_1539at 1638.362 kb on - strand, within Psest_1539at 1638.362 kb on - strand, within Psest_1539at 1638.436 kb on + strand, within Psest_1539at 1638.436 kb on + strand, within Psest_1539at 1638.436 kb on + strand, within Psest_1539at 1638.437 kb on - strand, within Psest_1539at 1638.437 kb on - strand, within Psest_1539at 1638.437 kb on - strand, within Psest_1539at 1638.437 kb on - strand, within Psest_1539at 1638.458 kb on - strand, within Psest_1539at 1638.518 kb on - strand, within Psest_1539at 1638.699 kb on - strand, within Psest_1539at 1638.699 kb on - strand, within Psest_1539at 1638.740 kb on - strand, within Psest_1539at 1639.098 kb on + strand, within Psest_1539at 1639.099 kb on - strand, within Psest_1539at 1639.155 kb on - strand, within Psest_1539at 1639.219 kb on + strand, within Psest_1539at 1639.219 kb on + strand, within Psest_1539at 1639.219 kb on + strand, within Psest_1539at 1639.219 kb on + strand, within Psest_1539at 1639.219 kb on + strand, within Psest_1539at 1639.219 kb on + strand, within Psest_1539at 1639.220 kb on - strand, within Psest_1539at 1639.220 kb on - strand, within Psest_1539at 1639.220 kb on - strand, within Psest_1539at 1639.220 kb on - strand, within Psest_1539at 1639.307 kb on + strandat 1639.471 kb on + strandat 1639.471 kb on + strandat 1639.471 kb on + strandat 1639.471 kb on + strandat 1639.472 kb on - strandat 1639.472 kb on - strandat 1639.472 kb on - strandat 1639.472 kb on - strandat 1639.840 kb on - strand, within Psest_1540at 1639.840 kb on - strand, within Psest_1540at 1639.840 kb on - strand, within Psest_1540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,637,146 + Psest_1537 0.11 +0.8
1,637,172 + Psest_1537 0.23 +0.6
1,637,172 + Psest_1537 0.23 +0.9
1,637,172 + Psest_1537 0.23 -1.2
1,637,173 - Psest_1537 0.24 +0.3
1,637,173 - Psest_1537 0.24 -0.9
1,637,173 - Psest_1537 0.24 -0.9
1,637,173 - Psest_1537 0.24 +0.3
1,637,284 + Psest_1537 0.74 -0.1
1,637,284 + Psest_1537 0.74 -0.2
1,637,284 + Psest_1537 0.74 -0.4
1,637,284 + Psest_1537 0.74 +0.7
1,637,284 + Psest_1537 0.74 +1.2
1,637,285 - Psest_1537 0.75 -0.2
1,637,285 - Psest_1537 0.75 +0.6
1,637,285 - Psest_1537 0.75 +0.9
1,637,285 - Psest_1537 0.75 -0.2
1,637,285 - Psest_1537 0.75 +1.3
1,637,285 - Psest_1537 0.75 -1.5
1,637,285 - Psest_1537 0.75 -0.1
1,637,285 - Psest_1537 0.75 -0.7
1,637,285 - Psest_1537 0.75 -0.6
1,637,285 - Psest_1537 0.75 -0.4
1,637,285 - Psest_1537 0.75 -0.6
1,637,285 - Psest_1537 0.75 -0.5
1,637,289 - Psest_1537 0.77 -0.9
1,637,289 - Psest_1537 0.77 +0.1
1,637,289 - Psest_1537 0.77 -0.4
1,637,289 - Psest_1537 0.77 -0.0
1,637,289 - Psest_1537 0.77 -1.2
1,637,289 - Psest_1537 0.77 +0.5
1,637,335 + +0.3
1,637,335 + +2.3
1,637,335 + -0.3
1,637,336 - -0.5
1,637,336 - +0.1
1,637,336 - -2.1
1,637,336 - +0.3
1,637,336 - -0.2
1,637,336 - -0.8
1,637,336 - +0.1
1,637,336 - -0.0
1,637,339 + +0.1
1,637,339 + -1.0
1,637,339 + -1.9
1,637,339 + -0.4
1,637,339 + +1.2
1,637,339 + -1.2
1,637,340 - -0.2
1,637,340 - +0.2
1,637,340 - -1.2
1,637,340 - +1.0
1,637,340 - +0.1
1,637,340 - -0.8
1,637,340 - -0.1
1,637,340 - -0.5
1,637,340 - -1.3
1,637,340 - -0.0
1,637,340 - +0.3
1,637,340 - -0.5
1,637,340 - -0.6
1,637,423 - -0.4
1,637,423 - -0.8
1,637,449 + +0.7
1,637,449 + +0.2
1,637,450 - -1.4
1,637,450 - -0.4
1,637,450 - +0.8
1,637,450 - -1.7
1,637,608 - Psest_1538 0.12 +0.0
1,637,682 + Psest_1538 0.25 +0.3
1,637,682 + Psest_1538 0.25 +0.2
1,637,682 + Psest_1538 0.25 -1.6
1,637,682 + Psest_1538 0.25 -0.0
1,637,683 - Psest_1538 0.26 +0.7
1,637,683 - Psest_1538 0.26 +1.7
1,637,683 - Psest_1538 0.26 +0.5
1,637,683 - Psest_1538 0.26 +0.2
1,637,683 - Psest_1538 0.26 -0.7
1,637,998 + Psest_1538 0.84 -1.8
1,637,999 - Psest_1538 0.84 +0.2
1,638,053 - -0.3
1,638,169 - +0.6
1,638,202 - +1.3
1,638,276 + Psest_1539 0.12 +1.1
1,638,276 + Psest_1539 0.12 +1.4
1,638,300 + Psest_1539 0.14 +1.1
1,638,361 + Psest_1539 0.19 -2.0
1,638,361 + Psest_1539 0.19 +0.7
1,638,362 - Psest_1539 0.19 +0.8
1,638,362 - Psest_1539 0.19 +0.6
1,638,362 - Psest_1539 0.19 +1.2
1,638,436 + Psest_1539 0.25 -0.4
1,638,436 + Psest_1539 0.25 +1.4
1,638,436 + Psest_1539 0.25 +1.0
1,638,437 - Psest_1539 0.25 +0.8
1,638,437 - Psest_1539 0.25 +1.0
1,638,437 - Psest_1539 0.25 +0.8
1,638,437 - Psest_1539 0.25 +0.8
1,638,458 - Psest_1539 0.27 +1.4
1,638,518 - Psest_1539 0.32 -0.0
1,638,699 - Psest_1539 0.47 +1.0
1,638,699 - Psest_1539 0.47 +1.3
1,638,740 - Psest_1539 0.50 +0.5
1,639,098 + Psest_1539 0.79 +0.6
1,639,099 - Psest_1539 0.79 +0.3
1,639,155 - Psest_1539 0.84 +1.6
1,639,219 + Psest_1539 0.89 +0.5
1,639,219 + Psest_1539 0.89 +1.3
1,639,219 + Psest_1539 0.89 +1.2
1,639,219 + Psest_1539 0.89 -0.1
1,639,219 + Psest_1539 0.89 +0.5
1,639,219 + Psest_1539 0.89 +0.9
1,639,220 - Psest_1539 0.89 +1.1
1,639,220 - Psest_1539 0.89 +2.0
1,639,220 - Psest_1539 0.89 -0.2
1,639,220 - Psest_1539 0.89 +3.8
1,639,307 + +0.4
1,639,471 + +0.6
1,639,471 + +0.3
1,639,471 + +0.8
1,639,471 + +0.3
1,639,472 - +0.4
1,639,472 - +0.2
1,639,472 - +1.5
1,639,472 - +0.1
1,639,840 - Psest_1540 0.41 +1.3
1,639,840 - Psest_1540 0.41 +1.4
1,639,840 - Psest_1540 0.41 +1.0

Or see this region's nucleotide sequence