Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1456

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1455 and Psest_1456 are separated by 39 nucleotidesPsest_1456 and Psest_1457 are separated by 81 nucleotidesPsest_1457 and Psest_1458 are separated by 303 nucleotides Psest_1455: Psest_1455 - diguanylate cyclase (GGDEF) domain, at 1,564,774 to 1,565,862 _1455 Psest_1456: Psest_1456 - Protein of unknown function (DUF2892)., at 1,565,902 to 1,566,294 _1456 Psest_1457: Psest_1457 - FOG: Ankyrin repeat, at 1,566,376 to 1,566,900 _1457 Psest_1458: Psest_1458 - Uncharacterized protein conserved in bacteria, at 1,567,204 to 1,567,422 _1458 Position (kb) 1565 1566 1567Strain fitness (log2 ratio) -2 -1 0 1 2at 1565.184 kb on - strand, within Psest_1455at 1565.206 kb on + strand, within Psest_1455at 1565.208 kb on + strand, within Psest_1455at 1565.209 kb on - strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.249 kb on + strand, within Psest_1455at 1565.281 kb on + strand, within Psest_1455at 1565.337 kb on + strand, within Psest_1455at 1565.750 kb on + strand, within Psest_1455at 1565.750 kb on + strand, within Psest_1455at 1565.750 kb on + strand, within Psest_1455at 1565.751 kb on - strand, within Psest_1455at 1565.773 kb on + strandat 1565.774 kb on - strandat 1565.774 kb on - strandat 1565.983 kb on + strand, within Psest_1456at 1566.197 kb on + strand, within Psest_1456at 1566.197 kb on + strand, within Psest_1456at 1566.200 kb on + strand, within Psest_1456at 1566.200 kb on + strand, within Psest_1456at 1566.200 kb on + strand, within Psest_1456at 1566.201 kb on - strand, within Psest_1456at 1566.201 kb on - strand, within Psest_1456at 1566.201 kb on - strand, within Psest_1456at 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.342 kb on - strandat 1566.342 kb on - strandat 1566.342 kb on - strandat 1566.342 kb on - strandat 1566.498 kb on - strand, within Psest_1457at 1566.722 kb on + strand, within Psest_1457at 1566.723 kb on - strand, within Psest_1457at 1566.922 kb on - strandat 1566.947 kb on - strandat 1566.947 kb on - strandat 1566.993 kb on + strandat 1566.994 kb on - strandat 1566.994 kb on - strandat 1566.994 kb on - strandat 1566.994 kb on - strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.015 kb on + strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.016 kb on - strandat 1567.258 kb on + strand, within Psest_1458at 1567.258 kb on + strand, within Psest_1458at 1567.259 kb on - strand, within Psest_1458at 1567.259 kb on - strand, within Psest_1458at 1567.259 kb on - strand, within Psest_1458at 1567.259 kb on - strand, within Psest_1458at 1567.259 kb on - strand, within Psest_1458at 1567.259 kb on - strand, within Psest_1458

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,565,184 - Psest_1455 0.38 -0.4
1,565,206 + Psest_1455 0.40 -0.2
1,565,208 + Psest_1455 0.40 -1.2
1,565,209 - Psest_1455 0.40 -1.9
1,565,227 + Psest_1455 0.42 +1.1
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 -1.6
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 -0.2
1,565,227 + Psest_1455 0.42 -0.6
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 -0.0
1,565,227 + Psest_1455 0.42 +0.7
1,565,227 + Psest_1455 0.42 +1.2
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 -0.3
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 -0.2
1,565,227 + Psest_1455 0.42 -1.0
1,565,227 + Psest_1455 0.42 +0.7
1,565,227 + Psest_1455 0.42 -0.4
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 -0.2
1,565,227 + Psest_1455 0.42 -0.3
1,565,227 + Psest_1455 0.42 +1.2
1,565,227 + Psest_1455 0.42 +1.4
1,565,227 + Psest_1455 0.42 +1.3
1,565,227 + Psest_1455 0.42 -0.8
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 +0.8
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 +0.7
1,565,227 + Psest_1455 0.42 +0.7
1,565,227 + Psest_1455 0.42 -0.0
1,565,227 + Psest_1455 0.42 +0.8
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +0.7
1,565,227 + Psest_1455 0.42 +0.1
1,565,227 + Psest_1455 0.42 +0.3
1,565,227 + Psest_1455 0.42 +1.1
1,565,227 + Psest_1455 0.42 -0.8
1,565,228 - Psest_1455 0.42 -0.9
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 +1.6
1,565,228 - Psest_1455 0.42 -2.2
1,565,228 - Psest_1455 0.42 +1.2
1,565,228 - Psest_1455 0.42 +0.0
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 +0.8
1,565,228 - Psest_1455 0.42 +0.1
1,565,228 - Psest_1455 0.42 -0.9
1,565,228 - Psest_1455 0.42 +0.8
1,565,228 - Psest_1455 0.42 +1.1
1,565,228 - Psest_1455 0.42 -0.1
1,565,228 - Psest_1455 0.42 +0.0
1,565,228 - Psest_1455 0.42 +0.3
1,565,228 - Psest_1455 0.42 -1.4
1,565,228 - Psest_1455 0.42 +0.5
1,565,228 - Psest_1455 0.42 +0.5
1,565,228 - Psest_1455 0.42 +0.6
1,565,228 - Psest_1455 0.42 +0.5
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 -1.5
1,565,228 - Psest_1455 0.42 +1.0
1,565,228 - Psest_1455 0.42 +1.9
1,565,228 - Psest_1455 0.42 +0.6
1,565,228 - Psest_1455 0.42 +0.6
1,565,228 - Psest_1455 0.42 -0.2
1,565,228 - Psest_1455 0.42 +0.9
1,565,228 - Psest_1455 0.42 +0.1
1,565,228 - Psest_1455 0.42 +0.6
1,565,228 - Psest_1455 0.42 +0.1
1,565,228 - Psest_1455 0.42 -0.2
1,565,228 - Psest_1455 0.42 -2.0
1,565,228 - Psest_1455 0.42 +0.0
1,565,228 - Psest_1455 0.42 +0.8
1,565,249 + Psest_1455 0.44 +0.4
1,565,281 + Psest_1455 0.47 -0.6
1,565,337 + Psest_1455 0.52 +1.6
1,565,750 + Psest_1455 0.90 +0.5
1,565,750 + Psest_1455 0.90 +0.2
1,565,750 + Psest_1455 0.90 -1.0
1,565,751 - Psest_1455 0.90 +0.1
1,565,773 + -0.5
1,565,774 - +0.5
1,565,774 - +0.2
1,565,983 + Psest_1456 0.21 +0.4
1,566,197 + Psest_1456 0.75 +1.5
1,566,197 + Psest_1456 0.75 +1.9
1,566,200 + Psest_1456 0.76 +2.1
1,566,200 + Psest_1456 0.76 +0.5
1,566,200 + Psest_1456 0.76 +0.1
1,566,201 - Psest_1456 0.76 -0.0
1,566,201 - Psest_1456 0.76 -1.7
1,566,201 - Psest_1456 0.76 -0.1
1,566,341 + +0.9
1,566,341 + -0.4
1,566,341 + -1.1
1,566,341 + +0.5
1,566,341 + +0.6
1,566,341 + +1.1
1,566,341 + +0.1
1,566,342 - -0.2
1,566,342 - +0.7
1,566,342 - +1.2
1,566,342 - +0.5
1,566,498 - Psest_1457 0.23 +1.0
1,566,722 + Psest_1457 0.66 -0.1
1,566,723 - Psest_1457 0.66 +0.5
1,566,922 - -0.0
1,566,947 - -0.3
1,566,947 - +1.3
1,566,993 + +0.8
1,566,994 - -0.5
1,566,994 - -1.3
1,566,994 - -1.2
1,566,994 - +0.5
1,567,015 + +0.1
1,567,015 + +0.9
1,567,015 + -0.0
1,567,015 + -0.8
1,567,015 + +1.1
1,567,015 + +0.2
1,567,015 + -0.6
1,567,015 + +0.2
1,567,015 + -0.1
1,567,015 + -2.1
1,567,015 + +0.8
1,567,015 + -0.4
1,567,015 + -0.2
1,567,016 - -0.2
1,567,016 - +0.1
1,567,016 - +0.0
1,567,016 - +0.3
1,567,016 - +1.8
1,567,016 - +0.0
1,567,016 - +1.4
1,567,016 - -0.4
1,567,016 - +0.3
1,567,016 - +0.4
1,567,016 - +0.5
1,567,016 - -0.6
1,567,016 - +0.8
1,567,016 - -0.0
1,567,016 - -0.0
1,567,016 - +1.0
1,567,016 - -0.3
1,567,016 - -0.4
1,567,016 - -0.2
1,567,258 + Psest_1458 0.25 +0.3
1,567,258 + Psest_1458 0.25 +0.1
1,567,259 - Psest_1458 0.25 +0.4
1,567,259 - Psest_1458 0.25 +0.0
1,567,259 - Psest_1458 0.25 -0.3
1,567,259 - Psest_1458 0.25 +0.5
1,567,259 - Psest_1458 0.25 +0.8
1,567,259 - Psest_1458 0.25 +0.7

Or see this region's nucleotide sequence