Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0718

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
787,004	+		Psest_0717	0.84	-0.5
787,005	-		Psest_0717	0.84	-0.1
787,005	-		Psest_0717	0.84	+0.7
787,230	-				+0.3
787,397	+				+0.1
787,397	+				+0.0
787,398	-				+1.2
787,438	-				-0.9
787,440	+				+0.8
787,440	+				+0.2
787,440	+				+0.3
787,440	+				+0.5
787,440	+				+0.1
787,445	+				-0.0
787,445	+				+0.2
787,494	+				-0.3
787,494	+				+0.3
787,494	+				+0.4
787,494	+				+0.5
787,494	+				+1.0
787,494	+				+0.2
787,494	+				+0.7
787,494	+				-0.4
787,495	-				-0.3
787,495	-				-0.3
787,556	+				-0.3
787,557	-				-0.3
787,618	+				+0.4
787,619	-				-0.4
787,619	-				-0.2
787,620	+				-0.5
787,620	+				+1.0
787,620	+				-0.5
787,620	+				+0.5
787,620	+				-0.5
787,620	+				+0.1
787,620	+				-0.3
787,620	+				-0.4
787,620	+				+0.3
787,620	+				+0.4
787,620	+				+0.3
787,620	+				+0.5
787,620	+				+0.6
787,620	+				+0.8
787,620	+				-0.2
787,620	+				-0.0
787,620	+				-0.0
787,620	+				-0.5
787,620	+				-0.2
787,620	+				-0.0
787,620	+				-0.9
787,620	+				+0.2
787,621	-				-0.8
787,621	-				-0.8
787,772	+				-0.6
787,772	+				+0.6
787,772	+				-0.2
787,772	+				+0.3
787,772	+				-0.1
787,772	+				+0.1
787,773	-				-0.8
787,775	-				-0.3
787,775	-				-1.5
787,775	-				-1.5
787,851	+				-1.0
787,851	+				-2.4
787,851	+				-2.1
787,851	+				-2.4
787,851	+				-1.9
787,851	+				-2.2
787,851	+				-1.2
787,851	+				-2.0
787,851	+				-2.0
787,851	+				-2.4
787,852	-				-1.8
787,852	-				-1.6
787,852	-				-1.9
787,852	-				-0.7
787,852	-				-3.1
788,165	+		Psest_0718	0.43	-1.9
788,246	+		Psest_0718	0.52	-2.4
788,246	+		Psest_0718	0.52	-3.7
788,291	+		Psest_0718	0.58	-3.7
788,291	+		Psest_0718	0.58	-1.4
788,305	+		Psest_0718	0.59	-3.6
788,305	+		Psest_0718	0.59	-1.5
788,306	-		Psest_0718	0.59	-2.8
788,447	-		Psest_0718	0.76	-0.6
788,582	+				-1.4
788,582	+				-2.2
788,582	+				-1.7
788,582	+				-2.3
788,582	+				-3.4
788,582	+				-1.9
788,582	+				-1.6
788,582	+				-1.5
788,582	+				-1.1
788,582	+				-2.8
788,582	+				-3.3
788,582	+				-3.3
788,582	+				-2.0
788,582	+				-3.7
788,582	+				-2.2
788,583	-				-0.9
788,583	-				-2.7
788,583	-				-3.4
788,583	-				-2.7
788,583	-				-1.1
788,583	-				-1.2
788,583	-				-1.0
788,583	-				-1.1
788,583	-				-1.1
788,583	-				-2.0
788,583	-				-2.8
788,583	-				-1.3
788,583	-				-2.6
788,583	-				-1.4
788,583	-				-2.4
788,583	-				-2.0
788,583	-				-1.0
788,583	-				-1.6
788,583	-				-1.6
788,584	+				-2.7
788,584	+				-2.2
788,584	+				+0.4
788,584	+				-2.1
788,584	+				-1.9
788,584	+				-1.2
788,584	+				-3.0
788,584	+				-2.3
788,585	-				-2.1
788,585	-				-2.4
788,585	-				-1.3
788,585	-				-1.7
788,585	-				-1.9
788,585	-				-1.5
788,585	-				-2.8
788,585	-				-2.3
788,585	-				-1.7
788,585	-				-1.7
788,629	-				-0.6
788,900	+		Psest_0719	0.47	-1.2
788,900	+		Psest_0719	0.47	-2.0
788,922	+		Psest_0719	0.52	-0.0
788,923	-		Psest_0719	0.52	+0.3
788,923	-		Psest_0719	0.52	-1.1
788,926	+		Psest_0719	0.53	+1.8
788,926	+		Psest_0719	0.53	+0.2
788,926	+		Psest_0719	0.53	+0.9
788,988	+		Psest_0719	0.67	-0.4
788,989	-		Psest_0719	0.67	+0.1
788,989	-		Psest_0719	0.67	+0.5
788,989	-		Psest_0719	0.67	+1.0
788,989	-		Psest_0719	0.67	+0.5
789,031	+		Psest_0719	0.77	-1.6
789,032	-		Psest_0719	0.77	-0.3
789,032	-		Psest_0719	0.77	+0.1
789,143	+				+0.1
789,143	+				-0.0
789,143	+				+1.1
789,143	+				+0.2
789,144	-				-0.7
789,144	-				-0.7
789,144	-				+0.7
789,144	-				-0.4
789,144	-				-0.2
789,144	-				+0.4
789,145	+				+1.0
789,145	+				-1.3
789,145	+				-1.4
789,146	-				-0.6
789,146	-				-0.2
789,146	-				+0.1
789,146	-				+0.9
789,147	+				+0.2
789,147	+				-0.2
789,147	+				-0.4
789,147	+				-0.2
789,147	+				+0.3
789,147	+				-0.9
789,147	+				+0.4
789,148	-				+0.1
789,148	-				-0.2
789,148	-				+0.3
789,148	-				+0.3
789,148	-				-0.0
789,148	-				-0.0
789,148	-				-0.9
789,148	-				+1.7
789,148	-				-0.9
789,148	-				-0.6
789,148	-				-1.9
789,161	+				+0.4
789,161	+				-2.7
789,161	+				-0.4
789,161	+				-1.3
789,161	+				-0.9
789,161	+				-0.4
789,161	+				+0.4
789,161	+				-0.5
789,162	-				+0.1
789,162	-				+0.2
789,162	-				-0.1
789,162	-				+0.3
789,162	-				+0.3
789,162	-				+0.5
789,162	-				+0.3
789,162	-				+0.4
789,162	-				-0.3
789,162	-				-0.4
789,176	+				-0.4
789,187	+				-0.8
789,188	-				-0.5
789,188	-				-1.0
789,188	-				-0.1
789,188	-				-0.6
789,188	-				+1.7
789,188	-				-1.9
789,188	-				+0.0
789,221	+				+1.1
789,221	+				-0.9
789,221	+				+0.1
789,221	+				-0.4
789,221	+				+0.5
789,221	+				+0.3
789,221	+				-0.2
789,221	+				-1.7
789,221	+				+0.6
789,221	+				+1.1
789,222	-				-0.4
789,222	-				-1.3
789,222	-				-0.6
789,222	-				-0.4
789,225	+				+1.8
789,225	+				-0.2
789,225	+				+0.1
789,225	+				-0.3
789,226	-				-0.7
789,226	-				-0.3
789,226	-				+2.3
789,226	-				-0.1
789,226	-				+0.2
789,226	-				-0.6
789,330	-				-0.7
789,330	-				-1.0
789,449	+		Psest_0720	0.29	-1.5
789,470	+		Psest_0720	0.32	-0.2
789,471	-		Psest_0720	0.32	-0.9