Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0330 and Psest_0331 are separated by 136 nucleotides Psest_0331 and Psest_0332 are separated by 22 nucleotides Psest_0332 and Psest_0333 are separated by 178 nucleotides Psest_0333 and Psest_0334 are separated by 60 nucleotides Psest_0334 and Psest_0335 are separated by 319 nucleotides
Psest_0330: Psest_0330 - 3-phosphoglycerate kinase, at 354,092 to 355,252
_0330
Psest_0331: Psest_0331 - hypothetical protein, at 355,389 to 355,580
_0331
Psest_0332: Psest_0332 - Membrane-bound lysozyme-inhibitor of c-type lysozyme., at 355,603 to 355,938
_0332
Psest_0333: Psest_0333 - fructose-bisphosphate aldolase, class II, Calvin cycle subtype, at 356,117 to 357,181
_0333
Psest_0334: Psest_0334 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 357,242 to 357,622
_0334
Psest_0335: Psest_0335 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 357,942 to 358,556
_0335
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.361 kb on + strand at 355.361 kb on + strand at 355.361 kb on + strand at 355.361 kb on + strand at 355.688 kb on + strand, within Psest_0332 at 355.689 kb on - strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.782 kb on + strand, within Psest_0332 at 355.783 kb on - strand, within Psest_0332 at 355.783 kb on - strand, within Psest_0332 at 355.783 kb on - strand, within Psest_0332 at 355.825 kb on + strand, within Psest_0332 at 355.825 kb on + strand, within Psest_0332 at 355.825 kb on + strand, within Psest_0332 at 355.826 kb on - strand, within Psest_0332 at 355.826 kb on - strand, within Psest_0332 at 355.827 kb on + strand, within Psest_0332 at 355.876 kb on + strand, within Psest_0332 at 355.932 kb on + strand at 355.932 kb on + strand at 355.932 kb on + strand at 355.932 kb on + strand at 355.932 kb on + strand at 355.933 kb on - strand at 355.933 kb on - strand at 355.943 kb on - strand at 355.950 kb on + strand at 355.950 kb on + strand at 355.951 kb on - strand at 356.003 kb on - strand at 356.024 kb on + strand at 357.193 kb on - strand at 357.342 kb on + strand, within Psest_0334 at 357.342 kb on + strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.571 kb on + strand, within Psest_0334 at 357.572 kb on - strand, within Psest_0334 at 357.642 kb on + strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.812 kb on + strand at 357.812 kb on + strand at 357.813 kb on - strand at 357.813 kb on - strand at 357.827 kb on - strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.981 kb on + strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.984 kb on + strand at 357.985 kb on - strand at 358.156 kb on + strand, within Psest_0335
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 355,361 + +0.3 355,361 + +1.5 355,361 + -1.3 355,361 + -0.4 355,688 + Psest_0332 0.25 +1.6 355,689 - Psest_0332 0.26 +0.0 355,782 + Psest_0332 0.53 -1.6 355,782 + Psest_0332 0.53 -0.1 355,782 + Psest_0332 0.53 -1.0 355,782 + Psest_0332 0.53 -0.2 355,782 + Psest_0332 0.53 -0.2 355,782 + Psest_0332 0.53 +0.6 355,782 + Psest_0332 0.53 -0.2 355,782 + Psest_0332 0.53 -0.4 355,782 + Psest_0332 0.53 -0.3 355,782 + Psest_0332 0.53 -0.4 355,782 + Psest_0332 0.53 -0.8 355,783 - Psest_0332 0.54 +0.5 355,783 - Psest_0332 0.54 +0.2 355,783 - Psest_0332 0.54 -1.2 355,825 + Psest_0332 0.66 -2.4 355,825 + Psest_0332 0.66 -0.5 355,825 + Psest_0332 0.66 -0.1 355,826 - Psest_0332 0.66 +0.2 355,826 - Psest_0332 0.66 -0.7 355,827 + Psest_0332 0.67 -0.2 355,876 + Psest_0332 0.81 +0.5 355,932 + +1.1 355,932 + -0.2 355,932 + +0.7 355,932 + -1.8 355,932 + -1.3 355,933 - -0.1 355,933 - +0.2 355,943 - +0.2 355,950 + +1.4 355,950 + +0.5 355,951 - +0.1 356,003 - +0.8 356,024 + +0.5 357,193 - +0.3 357,342 + Psest_0334 0.26 -1.3 357,342 + Psest_0334 0.26 -0.8 357,343 - Psest_0334 0.27 -0.8 357,343 - Psest_0334 0.27 -0.1 357,343 - Psest_0334 0.27 -1.9 357,343 - Psest_0334 0.27 +0.2 357,571 + Psest_0334 0.86 +0.0 357,572 - Psest_0334 0.87 -1.1 357,642 + +0.0 357,643 - +1.2 357,643 - +2.0 357,643 - +1.7 357,643 - +1.7 357,643 - +0.9 357,812 + +1.4 357,812 + +0.8 357,813 - +1.3 357,813 - +1.8 357,827 - +1.4 357,925 + +1.1 357,925 + -1.4 357,925 + +1.2 357,925 + -0.2 357,926 - +1.7 357,926 - +0.8 357,926 - +1.7 357,981 + -0.2 357,982 - +1.1 357,982 - +0.9 357,982 - +1.1 357,982 - +1.3 357,982 - +1.5 357,984 + +0.6 357,985 - +1.1 358,156 + Psest_0335 0.35 +0.3
Or see this region's nucleotide sequence