Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3968

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3967 and Psest_3968 are separated by 25 nucleotidesPsest_3968 and Psest_3969 are separated by 2 nucleotides Psest_3967: Psest_3967 - Alcohol dehydrogenase, class IV, at 4,133,954 to 4,135,117 _3967 Psest_3968: Psest_3968 - Acyl-CoA dehydrogenases, at 4,135,143 to 4,136,933 _3968 Psest_3969: Psest_3969 - 3-hydroxyacyl-CoA dehydrogenase, at 4,136,936 to 4,138,174 _3969 Position (kb) 4135 4136 4137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4134.153 kb on + strand, within Psest_3967at 4134.213 kb on + strand, within Psest_3967at 4134.214 kb on - strand, within Psest_3967at 4134.290 kb on - strand, within Psest_3967at 4134.312 kb on + strand, within Psest_3967at 4134.313 kb on - strand, within Psest_3967at 4134.507 kb on + strand, within Psest_3967at 4134.507 kb on + strand, within Psest_3967at 4134.508 kb on - strand, within Psest_3967at 4134.623 kb on + strand, within Psest_3967at 4134.750 kb on + strand, within Psest_3967at 4134.750 kb on + strand, within Psest_3967at 4134.751 kb on - strand, within Psest_3967at 4134.751 kb on - strand, within Psest_3967at 4134.914 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.924 kb on + strand, within Psest_3967at 4134.925 kb on - strand, within Psest_3967at 4134.925 kb on - strand, within Psest_3967at 4134.925 kb on - strand, within Psest_3967at 4134.991 kb on + strand, within Psest_3967at 4135.043 kb on + strandat 4135.043 kb on + strandat 4135.043 kb on + strandat 4135.044 kb on - strandat 4135.044 kb on - strandat 4135.243 kb on + strandat 4135.243 kb on + strandat 4135.244 kb on - strandat 4135.273 kb on + strandat 4135.273 kb on + strandat 4135.274 kb on - strandat 4135.274 kb on - strandat 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.357 kb on + strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.358 kb on - strand, within Psest_3968at 4135.591 kb on + strand, within Psest_3968at 4135.591 kb on + strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.592 kb on - strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.681 kb on + strand, within Psest_3968at 4135.682 kb on - strand, within Psest_3968at 4135.682 kb on - strand, within Psest_3968at 4135.872 kb on + strand, within Psest_3968at 4135.872 kb on + strand, within Psest_3968at 4135.873 kb on - strand, within Psest_3968at 4136.330 kb on + strand, within Psest_3968at 4136.331 kb on - strand, within Psest_3968at 4136.377 kb on + strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.491 kb on - strand, within Psest_3968at 4136.491 kb on - strand, within Psest_3968at 4136.491 kb on - strand, within Psest_3968at 4136.495 kb on - strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.528 kb on - strand, within Psest_3968at 4136.563 kb on + strand, within Psest_3968at 4136.563 kb on + strand, within Psest_3968at 4136.564 kb on - strand, within Psest_3968at 4136.564 kb on - strand, within Psest_3968at 4136.686 kb on + strand, within Psest_3968at 4136.687 kb on - strand, within Psest_3968at 4136.687 kb on - strand, within Psest_3968at 4136.696 kb on - strand, within Psest_3968at 4136.696 kb on - strand, within Psest_3968at 4136.797 kb on + strandat 4136.883 kb on + strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.926 kb on + strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4137.129 kb on + strand, within Psest_3969at 4137.129 kb on + strand, within Psest_3969at 4137.130 kb on - strand, within Psest_3969at 4137.130 kb on - strand, within Psest_3969at 4137.336 kb on + strand, within Psest_3969at 4137.337 kb on - strand, within Psest_3969at 4137.337 kb on - strand, within Psest_3969at 4137.471 kb on + strand, within Psest_3969at 4137.471 kb on + strand, within Psest_3969at 4137.471 kb on + strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.931 kb on - strand, within Psest_3969

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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4,134,153 + Psest_3967 0.17 +0.4
4,134,213 + Psest_3967 0.22 -0.4
4,134,214 - Psest_3967 0.22 +0.4
4,134,290 - Psest_3967 0.29 -0.7
4,134,312 + Psest_3967 0.31 -0.2
4,134,313 - Psest_3967 0.31 +0.1
4,134,507 + Psest_3967 0.48 +0.1
4,134,507 + Psest_3967 0.48 -0.6
4,134,508 - Psest_3967 0.48 +1.6
4,134,623 + Psest_3967 0.57 -0.5
4,134,750 + Psest_3967 0.68 -1.2
4,134,750 + Psest_3967 0.68 -0.6
4,134,751 - Psest_3967 0.68 +0.4
4,134,751 - Psest_3967 0.68 +0.2
4,134,914 + Psest_3967 0.82 -0.8
4,134,924 + Psest_3967 0.83 -2.3
4,134,924 + Psest_3967 0.83 +0.4
4,134,924 + Psest_3967 0.83 -0.3
4,134,924 + Psest_3967 0.83 +1.4
4,134,925 - Psest_3967 0.83 -0.7
4,134,925 - Psest_3967 0.83 +0.1
4,134,925 - Psest_3967 0.83 -0.4
4,134,991 + Psest_3967 0.89 +0.2
4,135,043 + -0.5
4,135,043 + +0.2
4,135,043 + -1.2
4,135,044 - -0.1
4,135,044 - -0.1
4,135,243 + -0.5
4,135,243 + -1.3
4,135,244 - -0.4
4,135,273 + -0.5
4,135,273 + -0.4
4,135,274 - +1.1
4,135,274 - +0.3
4,135,357 + Psest_3968 0.12 -1.2
4,135,357 + Psest_3968 0.12 -0.2
4,135,357 + Psest_3968 0.12 -0.7
4,135,357 + Psest_3968 0.12 -0.2
4,135,357 + Psest_3968 0.12 -1.8
4,135,358 - Psest_3968 0.12 -0.3
4,135,358 - Psest_3968 0.12 -1.5
4,135,358 - Psest_3968 0.12 -0.4
4,135,358 - Psest_3968 0.12 -0.9
4,135,358 - Psest_3968 0.12 +0.3
4,135,358 - Psest_3968 0.12 -0.1
4,135,591 + Psest_3968 0.25 -0.9
4,135,591 + Psest_3968 0.25 -1.1
4,135,592 - Psest_3968 0.25 -1.3
4,135,592 - Psest_3968 0.25 +1.4
4,135,592 - Psest_3968 0.25 -1.6
4,135,592 - Psest_3968 0.25 -1.2
4,135,681 + Psest_3968 0.30 -1.3
4,135,681 + Psest_3968 0.30 +0.2
4,135,681 + Psest_3968 0.30 -0.6
4,135,681 + Psest_3968 0.30 -0.5
4,135,682 - Psest_3968 0.30 -0.4
4,135,682 - Psest_3968 0.30 -1.6
4,135,872 + Psest_3968 0.41 -1.3
4,135,872 + Psest_3968 0.41 -2.1
4,135,873 - Psest_3968 0.41 -0.3
4,136,330 + Psest_3968 0.66 -1.2
4,136,331 - Psest_3968 0.66 -0.2
4,136,377 + Psest_3968 0.69 -0.4
4,136,378 - Psest_3968 0.69 +0.2
4,136,378 - Psest_3968 0.69 -0.9
4,136,378 - Psest_3968 0.69 +0.7
4,136,378 - Psest_3968 0.69 -0.6
4,136,378 - Psest_3968 0.69 -1.8
4,136,490 + Psest_3968 0.75 -0.7
4,136,490 + Psest_3968 0.75 -1.6
4,136,490 + Psest_3968 0.75 -1.8
4,136,490 + Psest_3968 0.75 -0.8
4,136,490 + Psest_3968 0.75 -1.0
4,136,491 - Psest_3968 0.75 -0.5
4,136,491 - Psest_3968 0.75 -0.4
4,136,491 - Psest_3968 0.75 -0.8
4,136,495 - Psest_3968 0.75 -2.8
4,136,527 + Psest_3968 0.77 +0.7
4,136,527 + Psest_3968 0.77 +1.2
4,136,527 + Psest_3968 0.77 -1.1
4,136,527 + Psest_3968 0.77 -0.7
4,136,527 + Psest_3968 0.77 -0.1
4,136,527 + Psest_3968 0.77 -0.8
4,136,528 - Psest_3968 0.77 +0.1
4,136,563 + Psest_3968 0.79 -0.7
4,136,563 + Psest_3968 0.79 +0.4
4,136,564 - Psest_3968 0.79 -0.5
4,136,564 - Psest_3968 0.79 -0.9
4,136,686 + Psest_3968 0.86 -1.3
4,136,687 - Psest_3968 0.86 +0.0
4,136,687 - Psest_3968 0.86 -0.8
4,136,696 - Psest_3968 0.87 -0.9
4,136,696 - Psest_3968 0.87 -1.2
4,136,797 + -0.0
4,136,883 + -0.6
4,136,884 - -1.2
4,136,884 - -0.3
4,136,884 - -0.2
4,136,884 - -0.5
4,136,884 - -0.5
4,136,884 - -1.0
4,136,926 + -1.5
4,136,927 - -0.6
4,136,927 - +0.3
4,136,927 - -0.3
4,136,927 - +0.4
4,136,927 - -1.4
4,136,927 - -1.4
4,137,129 + Psest_3969 0.16 -2.0
4,137,129 + Psest_3969 0.16 -0.7
4,137,130 - Psest_3969 0.16 +1.2
4,137,130 - Psest_3969 0.16 -0.2
4,137,336 + Psest_3969 0.32 -0.5
4,137,337 - Psest_3969 0.32 +2.4
4,137,337 - Psest_3969 0.32 +0.4
4,137,471 + Psest_3969 0.43 -0.4
4,137,471 + Psest_3969 0.43 -1.1
4,137,471 + Psest_3969 0.43 +1.2
4,137,472 - Psest_3969 0.43 -1.5
4,137,472 - Psest_3969 0.43 +1.4
4,137,472 - Psest_3969 0.43 +1.3
4,137,472 - Psest_3969 0.43 -0.0
4,137,472 - Psest_3969 0.43 +0.6
4,137,472 - Psest_3969 0.43 -0.8
4,137,472 - Psest_3969 0.43 +1.7
4,137,573 + Psest_3969 0.51 -1.4
4,137,573 + Psest_3969 0.51 -0.4
4,137,573 + Psest_3969 0.51 +1.2
4,137,573 + Psest_3969 0.51 -1.1
4,137,573 + Psest_3969 0.51 -0.4
4,137,573 + Psest_3969 0.51 +0.2
4,137,573 + Psest_3969 0.51 +0.4
4,137,574 - Psest_3969 0.51 -0.6
4,137,574 - Psest_3969 0.51 +1.0
4,137,574 - Psest_3969 0.51 -0.1
4,137,574 - Psest_3969 0.51 +0.4
4,137,574 - Psest_3969 0.51 -1.5
4,137,574 - Psest_3969 0.51 -0.1
4,137,574 - Psest_3969 0.51 +0.6
4,137,574 - Psest_3969 0.51 -0.2
4,137,574 - Psest_3969 0.51 +0.5
4,137,931 - Psest_3969 0.80 +0.5

Or see this region's nucleotide sequence