Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1701

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1699 and Psest_1700 are separated by 75 nucleotidesPsest_1700 and Psest_1701 are separated by 31 nucleotidesPsest_1701 and Psest_1702 are separated by 120 nucleotidesPsest_1702 and Psest_1703 are separated by 53 nucleotides Psest_1699: Psest_1699 - Selenocysteine lyase, at 1,805,422 to 1,806,555 _1699 Psest_1700: Psest_1700 - Transcriptional regulator, at 1,806,631 to 1,807,251 _1700 Psest_1701: Psest_1701 - Fe-S oxidoreductase, at 1,807,283 to 1,808,179 _1701 Psest_1702: Psest_1702 - hypothetical protein, at 1,808,300 to 1,808,911 _1702 Psest_1703: Psest_1703 - Uncharacterized protein conserved in bacteria, at 1,808,965 to 1,809,531 _1703 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 1806.394 kb on + strand, within Psest_1699at 1806.394 kb on + strand, within Psest_1699at 1806.395 kb on - strand, within Psest_1699at 1806.395 kb on - strand, within Psest_1699at 1806.524 kb on - strandat 1806.544 kb on + strandat 1806.587 kb on + strandat 1806.781 kb on + strand, within Psest_1700at 1806.781 kb on + strand, within Psest_1700at 1806.782 kb on - strand, within Psest_1700at 1806.782 kb on - strand, within Psest_1700at 1806.811 kb on + strand, within Psest_1700at 1806.811 kb on + strand, within Psest_1700at 1806.904 kb on + strand, within Psest_1700at 1806.904 kb on + strand, within Psest_1700at 1806.904 kb on + strand, within Psest_1700at 1807.096 kb on + strand, within Psest_1700at 1807.310 kb on + strandat 1807.310 kb on + strandat 1807.310 kb on + strandat 1807.314 kb on + strandat 1807.314 kb on + strandat 1807.314 kb on + strandat 1807.315 kb on - strandat 1807.315 kb on - strandat 1807.315 kb on - strandat 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.771 kb on + strand, within Psest_1701at 1807.855 kb on + strand, within Psest_1701at 1807.855 kb on + strand, within Psest_1701at 1807.855 kb on + strand, within Psest_1701at 1807.856 kb on - strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.475 kb on - strand, within Psest_1702at 1808.475 kb on - strand, within Psest_1702at 1808.475 kb on - strand, within Psest_1702at 1808.513 kb on + strand, within Psest_1702at 1808.514 kb on - strand, within Psest_1702at 1808.565 kb on - strand, within Psest_1702at 1808.646 kb on - strand, within Psest_1702at 1808.654 kb on + strand, within Psest_1702at 1808.655 kb on - strand, within Psest_1702at 1808.751 kb on + strand, within Psest_1702at 1808.751 kb on + strand, within Psest_1702at 1808.752 kb on - strand, within Psest_1702at 1808.752 kb on - strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.835 kb on - strand, within Psest_1702at 1808.835 kb on - strand, within Psest_1702at 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.880 kb on - strandat 1808.973 kb on + strandat 1808.993 kb on + strandat 1808.994 kb on - strandat 1808.994 kb on - strandat 1809.039 kb on - strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.045 kb on - strand, within Psest_1703at 1809.103 kb on + strand, within Psest_1703at 1809.107 kb on - strand, within Psest_1703

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,806,394 + Psest_1699 0.86 -1.6
1,806,394 + Psest_1699 0.86 -0.9
1,806,395 - Psest_1699 0.86 -1.1
1,806,395 - Psest_1699 0.86 +0.3
1,806,524 - +0.8
1,806,544 + -2.0
1,806,587 + +1.1
1,806,781 + Psest_1700 0.24 +9.8
1,806,781 + Psest_1700 0.24 +10.1
1,806,782 - Psest_1700 0.24 +10.6
1,806,782 - Psest_1700 0.24 +10.0
1,806,811 + Psest_1700 0.29 +9.8
1,806,811 + Psest_1700 0.29 +10.0
1,806,904 + Psest_1700 0.44 +9.4
1,806,904 + Psest_1700 0.44 +10.4
1,806,904 + Psest_1700 0.44 +9.4
1,807,096 + Psest_1700 0.75 +9.8
1,807,310 + +0.2
1,807,310 + +0.2
1,807,310 + +0.2
1,807,314 + -2.1
1,807,314 + +0.8
1,807,314 + -0.8
1,807,315 - +0.9
1,807,315 - -0.3
1,807,315 - +1.5
1,807,409 + Psest_1701 0.14 +0.4
1,807,409 + Psest_1701 0.14 +0.6
1,807,409 + Psest_1701 0.14 -0.5
1,807,409 + Psest_1701 0.14 -0.4
1,807,409 + Psest_1701 0.14 +1.4
1,807,409 + Psest_1701 0.14 +0.7
1,807,409 + Psest_1701 0.14 +0.2
1,807,409 + Psest_1701 0.14 +0.5
1,807,409 + Psest_1701 0.14 -0.9
1,807,410 - Psest_1701 0.14 -1.6
1,807,410 - Psest_1701 0.14 -1.2
1,807,410 - Psest_1701 0.14 -1.2
1,807,410 - Psest_1701 0.14 +0.7
1,807,410 - Psest_1701 0.14 -0.1
1,807,410 - Psest_1701 0.14 -0.1
1,807,410 - Psest_1701 0.14 -2.5
1,807,685 + Psest_1701 0.45 -0.0
1,807,685 + Psest_1701 0.45 -0.7
1,807,685 + Psest_1701 0.45 +0.2
1,807,685 + Psest_1701 0.45 -0.9
1,807,686 - Psest_1701 0.45 +0.0
1,807,686 - Psest_1701 0.45 -0.1
1,807,686 - Psest_1701 0.45 +0.0
1,807,686 - Psest_1701 0.45 +0.7
1,807,771 + Psest_1701 0.54 -0.2
1,807,855 + Psest_1701 0.64 -1.1
1,807,855 + Psest_1701 0.64 -0.3
1,807,855 + Psest_1701 0.64 -0.0
1,807,856 - Psest_1701 0.64 +1.8
1,808,060 + Psest_1701 0.87 -0.6
1,808,060 + Psest_1701 0.87 -0.6
1,808,060 + Psest_1701 0.87 -0.6
1,808,060 + Psest_1701 0.87 -2.2
1,808,061 - Psest_1701 0.87 +0.1
1,808,061 - Psest_1701 0.87 +0.3
1,808,061 - Psest_1701 0.87 +0.5
1,808,061 - Psest_1701 0.87 +0.5
1,808,474 + Psest_1702 0.28 -0.2
1,808,474 + Psest_1702 0.28 -0.7
1,808,474 + Psest_1702 0.28 -0.1
1,808,474 + Psest_1702 0.28 -1.0
1,808,474 + Psest_1702 0.28 +0.5
1,808,474 + Psest_1702 0.28 -0.6
1,808,474 + Psest_1702 0.28 +1.2
1,808,474 + Psest_1702 0.28 -0.6
1,808,474 + Psest_1702 0.28 -1.6
1,808,474 + Psest_1702 0.28 +1.1
1,808,475 - Psest_1702 0.29 -0.2
1,808,475 - Psest_1702 0.29 +0.9
1,808,475 - Psest_1702 0.29 -0.1
1,808,513 + Psest_1702 0.35 -0.8
1,808,514 - Psest_1702 0.35 +0.1
1,808,565 - Psest_1702 0.43 +0.3
1,808,646 - Psest_1702 0.57 -0.5
1,808,654 + Psest_1702 0.58 +0.8
1,808,655 - Psest_1702 0.58 -0.3
1,808,751 + Psest_1702 0.74 -1.8
1,808,751 + Psest_1702 0.74 -2.9
1,808,752 - Psest_1702 0.74 +1.5
1,808,752 - Psest_1702 0.74 +0.2
1,808,834 + Psest_1702 0.87 +0.1
1,808,834 + Psest_1702 0.87 -0.3
1,808,834 + Psest_1702 0.87 -0.0
1,808,834 + Psest_1702 0.87 -0.7
1,808,835 - Psest_1702 0.87 -0.6
1,808,835 - Psest_1702 0.87 -1.8
1,808,879 + -2.0
1,808,879 + -1.6
1,808,879 + -0.1
1,808,879 + -2.1
1,808,879 + -3.0
1,808,879 + -0.5
1,808,880 - -1.4
1,808,973 + -0.4
1,808,993 + -1.1
1,808,994 - -0.7
1,808,994 - -0.8
1,809,039 - Psest_1703 0.13 -1.1
1,809,044 + Psest_1703 0.14 +0.6
1,809,044 + Psest_1703 0.14 -0.5
1,809,044 + Psest_1703 0.14 -0.8
1,809,044 + Psest_1703 0.14 -0.3
1,809,044 + Psest_1703 0.14 -1.0
1,809,044 + Psest_1703 0.14 -1.3
1,809,044 + Psest_1703 0.14 -0.9
1,809,045 - Psest_1703 0.14 -1.5
1,809,103 + Psest_1703 0.24 -1.9
1,809,107 - Psest_1703 0.25 -1.9

Or see this region's nucleotide sequence