Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0454

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0453 and Psest_0454 are separated by 43 nucleotidesPsest_0454 and Psest_0455 are separated by 8 nucleotidesPsest_0455 and Psest_0456 overlap by 1 nucleotides Psest_0453: Psest_0453 - Glycosyltransferase, at 499,210 to 500,331 _0453 Psest_0454: Psest_0454 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 500,375 to 501,181 _0454 Psest_0455: Psest_0455 - ADP-heptose:LPS heptosyltransferase, at 501,190 to 502,146 _0455 Psest_0456: Psest_0456 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 502,146 to 502,880 _0456 Position (kb) 500 501 502Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 500.374 kb on + strandat 501.236 kb on + strandat 501.236 kb on + strandat 501.236 kb on + strandat 501.236 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.272 kb on + strandat 501.272 kb on + strandat 501.309 kb on + strand, within Psest_0455at 501.309 kb on + strand, within Psest_0455at 501.318 kb on + strand, within Psest_0455at 501.318 kb on + strand, within Psest_0455at 501.334 kb on + strand, within Psest_0455at 501.334 kb on + strand, within Psest_0455at 501.334 kb on + strand, within Psest_0455at 501.334 kb on + strand, within Psest_0455at 501.415 kb on + strand, within Psest_0455at 501.415 kb on + strand, within Psest_0455at 501.415 kb on + strand, within Psest_0455at 501.415 kb on + strand, within Psest_0455at 501.415 kb on + strand, within Psest_0455at 501.513 kb on + strand, within Psest_0455at 501.513 kb on + strand, within Psest_0455at 501.513 kb on + strand, within Psest_0455at 501.513 kb on + strand, within Psest_0455at 501.617 kb on + strand, within Psest_0455at 501.617 kb on + strand, within Psest_0455at 501.617 kb on + strand, within Psest_0455at 501.677 kb on + strand, within Psest_0455at 501.710 kb on + strand, within Psest_0455at 501.748 kb on + strand, within Psest_0455at 501.748 kb on + strand, within Psest_0455at 501.748 kb on + strand, within Psest_0455at 501.748 kb on + strand, within Psest_0455at 501.996 kb on + strand, within Psest_0455at 502.084 kb on + strandat 502.084 kb on + strandat 502.084 kb on + strandat 502.084 kb on + strandat 502.084 kb on + strandat 502.088 kb on + strandat 502.137 kb on + strandat 502.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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500,374 + +3.0
501,236 + -2.2
501,236 + +3.4
501,236 + +0.7
501,236 + +2.9
501,251 + +6.6
501,251 + +6.6
501,251 + +4.8
501,251 + +7.0
501,251 + +5.9
501,251 + +4.4
501,251 + +3.5
501,253 + +3.8
501,253 + +4.1
501,253 + +5.6
501,253 + -0.6
501,253 + +4.1
501,253 + +4.6
501,253 + -0.3
501,253 + +3.4
501,253 + +9.3
501,253 + +9.4
501,253 + +4.4
501,253 + +1.0
501,253 + +4.3
501,272 + +8.1
501,272 + +7.7
501,309 + Psest_0455 0.12 +8.1
501,309 + Psest_0455 0.12 +3.2
501,318 + Psest_0455 0.13 +4.0
501,318 + Psest_0455 0.13 +4.4
501,334 + Psest_0455 0.15 +3.2
501,334 + Psest_0455 0.15 +4.3
501,334 + Psest_0455 0.15 +4.7
501,334 + Psest_0455 0.15 +4.2
501,415 + Psest_0455 0.24 +3.8
501,415 + Psest_0455 0.24 +4.6
501,415 + Psest_0455 0.24 +3.4
501,415 + Psest_0455 0.24 +3.2
501,415 + Psest_0455 0.24 +5.1
501,513 + Psest_0455 0.34 +4.4
501,513 + Psest_0455 0.34 +6.7
501,513 + Psest_0455 0.34 +2.7
501,513 + Psest_0455 0.34 +1.7
501,617 + Psest_0455 0.45 +5.0
501,617 + Psest_0455 0.45 +6.8
501,617 + Psest_0455 0.45 +2.0
501,677 + Psest_0455 0.51 +6.4
501,710 + Psest_0455 0.54 +4.9
501,748 + Psest_0455 0.58 +2.8
501,748 + Psest_0455 0.58 +2.9
501,748 + Psest_0455 0.58 +1.8
501,748 + Psest_0455 0.58 +2.4
501,996 + Psest_0455 0.84 +3.3
502,084 + +2.9
502,084 + +1.3
502,084 + +1.7
502,084 + +4.8
502,084 + +0.7
502,088 + +4.5
502,137 + +3.0
502,173 + +6.2

Or see this region's nucleotide sequence