Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0355

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0354 and Psest_0355 are separated by 219 nucleotidesPsest_0355 and Psest_0356 are separated by 15 nucleotides Psest_0354: Psest_0354 - Malate synthase G (EC 2.3.3.9) (from data), at 379,042 to 381,222 _0354 Psest_0355: Psest_0355 - Glycine cleavage system regulatory protein, at 381,442 to 381,966 _0355 Psest_0356: Psest_0356 - rarD protein, at 381,982 to 382,872 _0356 Position (kb) 381 382Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 380.807 kb on + strand, within Psest_0354at 380.807 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.981 kb on + strand, within Psest_0354at 380.982 kb on - strand, within Psest_0354at 380.982 kb on - strand, within Psest_0354at 380.982 kb on - strand, within Psest_0354at 380.982 kb on - strand, within Psest_0354at 380.982 kb on - strand, within Psest_0354at 381.173 kb on + strandat 381.245 kb on + strandat 381.245 kb on + strandat 381.246 kb on - strandat 381.246 kb on - strandat 381.246 kb on - strandat 381.272 kb on + strandat 381.289 kb on + strandat 381.289 kb on + strandat 381.292 kb on + strandat 381.292 kb on + strandat 381.292 kb on + strandat 381.292 kb on + strandat 381.292 kb on + strandat 381.292 kb on + strandat 381.292 kb on + strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.293 kb on - strandat 381.386 kb on + strandat 381.386 kb on + strandat 381.387 kb on - strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.388 kb on + strandat 381.389 kb on - strandat 381.392 kb on + strandat 381.392 kb on + strandat 381.392 kb on + strandat 381.392 kb on + strandat 381.392 kb on + strandat 381.393 kb on - strandat 381.528 kb on + strand, within Psest_0355at 381.629 kb on + strand, within Psest_0355at 381.713 kb on + strand, within Psest_0355at 381.996 kb on + strandat 381.996 kb on + strandat 381.996 kb on + strandat 381.997 kb on - strandat 381.997 kb on - strandat 382.025 kb on + strandat 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.553 kb on + strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.554 kb on - strand, within Psest_0356at 382.556 kb on + strand, within Psest_0356at 382.556 kb on + strand, within Psest_0356at 382.557 kb on - strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.604 kb on + strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.605 kb on - strand, within Psest_0356at 382.715 kb on - strand, within Psest_0356at 382.796 kb on + strandat 382.797 kb on - strandat 382.844 kb on + strandat 382.938 kb on - strandat 382.950 kb on + strandat 382.950 kb on + strandat 382.950 kb on + strandat 382.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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380,807 + Psest_0354 0.81 -0.5
380,807 + Psest_0354 0.81 +0.5
380,981 + Psest_0354 0.89 +0.9
380,981 + Psest_0354 0.89 -0.6
380,981 + Psest_0354 0.89 +2.1
380,981 + Psest_0354 0.89 +2.2
380,981 + Psest_0354 0.89 -2.1
380,981 + Psest_0354 0.89 +1.2
380,981 + Psest_0354 0.89 +0.9
380,981 + Psest_0354 0.89 -0.2
380,981 + Psest_0354 0.89 +2.1
380,981 + Psest_0354 0.89 -1.1
380,981 + Psest_0354 0.89 +1.9
380,981 + Psest_0354 0.89 +2.1
380,982 - Psest_0354 0.89 +0.2
380,982 - Psest_0354 0.89 +2.7
380,982 - Psest_0354 0.89 -0.8
380,982 - Psest_0354 0.89 -0.5
380,982 - Psest_0354 0.89 +1.0
381,173 + +2.9
381,245 + -1.0
381,245 + +0.7
381,246 - +2.6
381,246 - +2.8
381,246 - -0.8
381,272 + -0.5
381,289 + +1.0
381,289 + +0.1
381,292 + +2.4
381,292 + +1.7
381,292 + -0.9
381,292 + +0.5
381,292 + -1.2
381,292 + +1.8
381,292 + +3.0
381,293 - +1.6
381,293 - +1.1
381,293 - +0.8
381,293 - -0.9
381,293 - +0.1
381,293 - -0.3
381,293 - +1.4
381,293 - +0.4
381,293 - +0.9
381,293 - +0.3
381,293 - -0.7
381,293 - +0.1
381,293 - -3.0
381,293 - +0.3
381,293 - +0.3
381,293 - +0.4
381,386 + +1.4
381,386 + +1.6
381,387 - +0.0
381,388 + +1.9
381,388 + +1.3
381,388 + -0.7
381,388 + -0.0
381,388 + -1.2
381,388 + -2.9
381,388 + -1.6
381,388 + +1.9
381,388 + -0.4
381,388 + +1.2
381,388 + +1.0
381,389 - -0.1
381,392 + +0.0
381,392 + +0.0
381,392 + +1.7
381,392 + +1.7
381,392 + +1.6
381,393 - +0.6
381,528 + Psest_0355 0.16 -2.3
381,629 + Psest_0355 0.36 -1.3
381,713 + Psest_0355 0.52 -2.3
381,996 + +0.2
381,996 + +1.1
381,996 + +1.1
381,997 - -0.6
381,997 - +0.7
382,025 + -1.5
382,553 + Psest_0356 0.64 +1.6
382,553 + Psest_0356 0.64 -0.1
382,553 + Psest_0356 0.64 +1.0
382,553 + Psest_0356 0.64 +1.0
382,553 + Psest_0356 0.64 +2.5
382,553 + Psest_0356 0.64 -0.1
382,553 + Psest_0356 0.64 +0.0
382,553 + Psest_0356 0.64 +0.7
382,553 + Psest_0356 0.64 +0.4
382,553 + Psest_0356 0.64 +2.1
382,553 + Psest_0356 0.64 -0.1
382,553 + Psest_0356 0.64 -1.2
382,554 - Psest_0356 0.64 -1.5
382,554 - Psest_0356 0.64 +1.7
382,554 - Psest_0356 0.64 -2.7
382,554 - Psest_0356 0.64 -0.4
382,554 - Psest_0356 0.64 +1.6
382,554 - Psest_0356 0.64 +0.1
382,556 + Psest_0356 0.64 +2.0
382,556 + Psest_0356 0.64 -2.6
382,557 - Psest_0356 0.65 -2.8
382,604 + Psest_0356 0.70 -0.1
382,604 + Psest_0356 0.70 -0.0
382,604 + Psest_0356 0.70 +0.4
382,604 + Psest_0356 0.70 +0.1
382,604 + Psest_0356 0.70 -1.0
382,604 + Psest_0356 0.70 -0.0
382,604 + Psest_0356 0.70 -2.0
382,604 + Psest_0356 0.70 +0.1
382,604 + Psest_0356 0.70 -1.5
382,604 + Psest_0356 0.70 +1.1
382,605 - Psest_0356 0.70 +0.2
382,605 - Psest_0356 0.70 -0.2
382,605 - Psest_0356 0.70 +1.8
382,605 - Psest_0356 0.70 -3.2
382,605 - Psest_0356 0.70 -0.9
382,605 - Psest_0356 0.70 +1.3
382,605 - Psest_0356 0.70 +0.8
382,605 - Psest_0356 0.70 -2.1
382,605 - Psest_0356 0.70 +0.2
382,605 - Psest_0356 0.70 +0.7
382,605 - Psest_0356 0.70 +0.4
382,605 - Psest_0356 0.70 -0.3
382,605 - Psest_0356 0.70 -1.9
382,605 - Psest_0356 0.70 -1.9
382,715 - Psest_0356 0.82 -2.9
382,796 + +0.4
382,797 - +1.5
382,844 + -0.9
382,938 - -1.8
382,950 + +1.3
382,950 + +1.2
382,950 + +0.6
382,951 - +1.4

Or see this region's nucleotide sequence