Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0348

Experiment: L-tyrosine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine (C)
371,104	+		Psest_0347	0.49	-2.4
371,162	-		Psest_0347	0.53	-0.6
371,162	-		Psest_0347	0.53	-1.2
371,232	+		Psest_0347	0.57	-2.2
371,232	+		Psest_0347	0.57	-0.8
371,233	-		Psest_0347	0.57	-4.3
371,233	-		Psest_0347	0.57	-2.9
371,233	-		Psest_0347	0.57	-2.5
371,233	-		Psest_0347	0.57	-1.7
371,284	+		Psest_0347	0.59	-0.1
371,284	+		Psest_0347	0.59	-1.4
371,284	+		Psest_0347	0.59	-2.0
371,284	+		Psest_0347	0.59	-0.9
371,284	+		Psest_0347	0.59	-0.8
371,284	+		Psest_0347	0.59	-0.6
371,284	+		Psest_0347	0.59	-1.4
371,285	-		Psest_0347	0.60	-2.4
371,285	-		Psest_0347	0.60	+0.9
371,285	-		Psest_0347	0.60	-2.6
371,285	-		Psest_0347	0.60	+0.2
371,285	-		Psest_0347	0.60	-2.3
371,285	-		Psest_0347	0.60	-2.4
371,285	-		Psest_0347	0.60	-3.8
371,285	-		Psest_0347	0.60	-0.4
371,633	+		Psest_0347	0.79	-4.0
371,634	-		Psest_0347	0.79	-0.9
371,691	+		Psest_0347	0.82	+0.2
371,691	+		Psest_0347	0.82	-2.9
371,691	+		Psest_0347	0.82	-0.8
371,764	+		Psest_0347	0.87	-2.4
371,764	+		Psest_0347	0.87	+1.7
371,764	+		Psest_0347	0.87	-1.4
371,764	+		Psest_0347	0.87	-1.5
371,764	+		Psest_0347	0.87	-0.2
371,764	+		Psest_0347	0.87	-0.9
371,764	+		Psest_0347	0.87	-3.3
371,764	+		Psest_0347	0.87	-2.5
371,764	+		Psest_0347	0.87	-1.0
371,764	+		Psest_0347	0.87	-1.9
371,764	+		Psest_0347	0.87	-1.9
371,765	-		Psest_0347	0.87	-2.2
371,765	-		Psest_0347	0.87	-2.9
371,765	-		Psest_0347	0.87	-0.6
371,765	-		Psest_0347	0.87	-1.2
371,776	+		Psest_0347	0.87	-0.8
371,899	+				-1.2
371,998	+				-0.2
372,005	+				-1.8
372,005	+				+0.2
372,005	+				-0.3
372,048	+				-1.9
372,048	+				-1.8
372,048	+				-1.3
372,048	+				+1.6
372,048	+				-0.7
372,048	+				-0.6
372,048	+				-3.3
372,049	-				-2.1
372,049	-				-0.6
372,095	+				-2.0
372,095	+				-1.4
372,095	+				-0.2
372,095	+				+0.1
372,095	+				+0.5
372,095	+				-0.4
372,095	+				+1.8
372,095	+				-3.6
372,095	+				-0.8
372,095	+				-3.2
372,095	+				+0.4
372,095	+				-3.6
372,095	+				-1.0
372,095	+				-0.7
372,095	+				-1.9
372,095	+				-0.9
372,095	+				-0.4
372,095	+				-2.0
372,095	+				-3.3
372,095	+				+0.0
372,095	+				-1.3
372,095	+				-0.2
372,095	+				-0.5
372,095	+				+0.7
372,095	+				+0.1
372,095	+				-0.6
372,095	+				+0.8
372,095	+				-1.6
372,095	+				+0.5
372,095	+				+0.4
372,095	+				-1.5
372,095	+				+1.1
372,095	+				+0.9
372,096	-				-1.7
372,096	-				-0.7
372,096	-				-1.5
372,096	-				+0.5
372,096	-				-1.6
372,096	-				-2.2
372,096	-				+0.0
372,096	-				-3.1
372,096	-				-2.2
372,096	-				-1.2
372,096	-				+0.5
372,096	-				-2.6
372,096	-				-2.2
372,096	-				-3.1
372,096	-				-0.6
372,096	-				-1.9
372,096	-				-1.6
372,096	-				-2.3
372,096	-				-2.0
372,096	-				-1.1
372,097	+				+0.1
372,097	+				-2.0
372,097	+				-0.6
372,097	+				-0.7
372,097	+				-1.5
372,097	+				-0.4
372,097	+				-2.6
372,097	+				-1.6
372,097	+				-1.3
372,097	+				-1.6
372,097	+				+0.0
372,097	+				-1.6
372,097	+				-1.2
372,097	+				-1.9
372,097	+				-0.2
372,097	+				-0.6
372,097	+				-1.1
372,097	+				-2.1
372,097	+				+0.4
372,097	+				-2.5
372,097	+				-0.7
372,097	+				-0.6
372,098	-				+0.2
372,098	-				-3.7
372,098	-				-3.7
372,098	-				-1.7
372,098	-				-1.3
372,098	-				-1.1
372,098	-				-2.9
372,098	-				-2.2
372,098	-				-1.4
372,098	-				-1.8
372,098	-				-3.8
372,098	-				-1.1
372,098	-				-1.7
372,098	-				-1.9
372,098	-				-0.9
372,111	+				-1.7
372,111	+				-1.3
372,111	+				-2.4
372,112	-				-1.9
372,112	-				-2.7
372,112	-				-1.2
372,112	-				-3.2
372,179	-		Psest_0348	0.16	-2.4
372,233	+		Psest_0348	0.26	-1.2
372,233	+		Psest_0348	0.26	-1.3
372,234	-		Psest_0348	0.26	-2.7
372,234	-		Psest_0348	0.26	-1.2
372,234	-		Psest_0348	0.26	-2.8
372,246	-		Psest_0348	0.29	-0.6
372,368	+		Psest_0348	0.52	-4.4
372,368	+		Psest_0348	0.52	-0.4
372,368	+		Psest_0348	0.52	-0.8
372,370	+		Psest_0348	0.52	-1.4
372,370	+		Psest_0348	0.52	-2.3
372,370	+		Psest_0348	0.52	-2.2
372,371	-		Psest_0348	0.53	-2.8
372,371	-		Psest_0348	0.53	-1.1
372,587	+				-3.4
372,587	+				-2.0
372,588	-				-2.5
372,595	+				-0.1
372,596	-				-4.5
372,596	-				-2.7
372,596	-				-2.1
372,618	+				-2.4
372,618	+				+1.9
372,618	+				+1.5
372,618	+				+2.4
372,618	+				+0.7
372,618	+				-1.0
372,618	+				-2.2
372,760	-				-1.0
372,760	-				+0.5
372,760	-				+0.6
372,959	+		Psest_0349	0.23	-1.9
372,973	+		Psest_0349	0.25	+0.7
372,973	+		Psest_0349	0.25	-1.9
372,973	+		Psest_0349	0.25	-2.9
372,974	-		Psest_0349	0.25	+0.6
373,023	+		Psest_0349	0.32	-2.0
373,023	+		Psest_0349	0.32	-2.1
373,023	+		Psest_0349	0.32	-0.5
373,024	-		Psest_0349	0.32	-2.0
373,024	-		Psest_0349	0.32	-0.8
373,024	-		Psest_0349	0.32	-1.3
373,024	-		Psest_0349	0.32	+1.5
373,024	-		Psest_0349	0.32	+0.1
373,289	-		Psest_0349	0.70	-1.9
373,384	-		Psest_0349	0.83	-0.5
373,496	+				+0.4
373,496	+				-1.7
373,496	+				+1.4
373,496	+				-1.7
373,496	+				-1.0
373,496	+				-2.2
373,496	+				-0.1
373,496	+				+0.4
373,496	+				+0.9
373,496	+				-3.0
373,497	-				-0.0
373,497	-				-0.0
373,497	-				+1.4
373,497	-				+0.5
373,497	-				+1.8
373,497	-				+1.6
373,497	-				+0.1
373,497	-				+0.8
373,497	-				-0.4
373,502	+				+0.2
373,502	+				-0.4
373,502	+				-1.2
373,502	+				-0.7
373,502	+				-3.0
373,502	+				-3.0
373,502	+				-1.9
373,502	+				-1.7
373,502	+				-0.4
373,502	+				+0.5
373,502	+				-2.1