Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3125

Experiment: L-tyrosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3123 and Psest_3124 overlap by 4 nucleotidesPsest_3124 and Psest_3125 are separated by 109 nucleotidesPsest_3125 and Psest_3126 are separated by 74 nucleotides Psest_3123: Psest_3123 - dihydroorotase, homodimeric type, at 3,299,633 to 3,300,676 _3123 Psest_3124: Psest_3124 - ribonuclease T, at 3,300,673 to 3,301,347 _3124 Psest_3125: Psest_3125 - threonine synthase, at 3,301,457 to 3,302,866 _3125 Psest_3126: Psest_3126 - Homoserine dehydrogenase, at 3,302,941 to 3,304,245 _3126 Position (kb) 3301 3302 3303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.459 kb on - strand, within Psest_3123at 3300.550 kb on + strand, within Psest_3123at 3301.016 kb on + strand, within Psest_3124at 3301.016 kb on + strand, within Psest_3124at 3302.943 kb on - strandat 3302.943 kb on - strandat 3302.943 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
remove
3,300,458 + Psest_3123 0.79 +1.2
3,300,458 + Psest_3123 0.79 +1.2
3,300,458 + Psest_3123 0.79 +1.8
3,300,459 - Psest_3123 0.79 +0.8
3,300,550 + Psest_3123 0.88 +2.8
3,301,016 + Psest_3124 0.51 +1.2
3,301,016 + Psest_3124 0.51 -0.5
3,302,943 - +0.3
3,302,943 - -0.2
3,302,943 - -2.2

Or see this region's nucleotide sequence