Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0283

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0281 and Psest_0282 are separated by 276 nucleotidesPsest_0282 and Psest_0283 are separated by 9 nucleotidesPsest_0283 and Psest_0284 are separated by 10 nucleotidesPsest_0284 and Psest_0285 are separated by 66 nucleotides Psest_0281: Psest_0281 - Dynamin family., at 295,911 to 297,872 _0281 Psest_0282: Psest_0282 - Predicted integral membrane protein, at 298,149 to 298,739 _0282 Psest_0283: Psest_0283 - pyrroline-5-carboxylate reductase, at 298,749 to 299,573 _0283 Psest_0284: Psest_0284 - pyridoxal phosphate enzyme, YggS family, at 299,584 to 300,273 _0284 Psest_0285: Psest_0285 - pilus retraction protein PilT, at 300,340 to 301,374 _0285 Position (kb) 298 299 300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 297.841 kb on + strandat 297.841 kb on + strandat 297.841 kb on + strandat 297.908 kb on - strandat 298.073 kb on + strandat 298.073 kb on + strandat 298.073 kb on + strandat 298.073 kb on + strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.074 kb on - strandat 298.077 kb on + strandat 298.077 kb on + strandat 298.077 kb on + strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.155 kb on - strandat 298.630 kb on + strand, within Psest_0282at 299.036 kb on - strand, within Psest_0283at 299.573 kb on + strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.574 kb on - strandat 299.698 kb on - strand, within Psest_0284at 299.845 kb on + strand, within Psest_0284at 299.845 kb on + strand, within Psest_0284at 299.846 kb on - strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.908 kb on + strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.909 kb on - strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.910 kb on + strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.911 kb on - strand, within Psest_0284at 299.923 kb on + strand, within Psest_0284at 299.923 kb on + strand, within Psest_0284at 299.924 kb on - strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.101 kb on + strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.102 kb on - strand, within Psest_0284at 300.252 kb on + strandat 300.252 kb on + strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.253 kb on - strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.274 kb on + strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.275 kb on - strandat 300.311 kb on + strandat 300.311 kb on + strandat 300.311 kb on + strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.312 kb on - strandat 300.326 kb on - strandat 300.326 kb on - strandat 300.346 kb on - strandat 300.493 kb on + strand, within Psest_0285at 300.493 kb on + strand, within Psest_0285at 300.493 kb on + strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285at 300.494 kb on - strand, within Psest_0285

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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297,841 + -0.3
297,841 + -0.5
297,841 + -3.9
297,908 - +0.2
298,073 + +0.0
298,073 + -0.1
298,073 + +0.3
298,073 + -0.9
298,074 - +1.4
298,074 - +0.9
298,074 - +2.0
298,074 - +0.8
298,074 - +1.3
298,074 - -0.0
298,074 - -0.4
298,074 - +1.9
298,077 + +0.1
298,077 + -0.5
298,077 + -0.9
298,078 - -1.0
298,078 - +2.3
298,078 - +1.6
298,078 - +0.5
298,155 - +1.3
298,630 + Psest_0282 0.81 -1.0
299,036 - Psest_0283 0.35 -0.5
299,573 + +0.7
299,574 - -0.7
299,574 - -1.1
299,574 - +1.7
299,574 - +0.5
299,574 - -1.5
299,698 - Psest_0284 0.17 -1.5
299,845 + Psest_0284 0.38 -1.6
299,845 + Psest_0284 0.38 -2.2
299,846 - Psest_0284 0.38 +2.0
299,908 + Psest_0284 0.47 +0.4
299,908 + Psest_0284 0.47 -0.5
299,908 + Psest_0284 0.47 +0.7
299,908 + Psest_0284 0.47 +0.7
299,908 + Psest_0284 0.47 +1.1
299,908 + Psest_0284 0.47 -0.6
299,908 + Psest_0284 0.47 -1.5
299,909 - Psest_0284 0.47 +0.5
299,909 - Psest_0284 0.47 -0.5
299,909 - Psest_0284 0.47 +1.1
299,909 - Psest_0284 0.47 +1.0
299,909 - Psest_0284 0.47 -1.9
299,909 - Psest_0284 0.47 +1.4
299,909 - Psest_0284 0.47 +0.8
299,909 - Psest_0284 0.47 +2.0
299,909 - Psest_0284 0.47 -0.3
299,909 - Psest_0284 0.47 +0.6
299,909 - Psest_0284 0.47 +2.7
299,909 - Psest_0284 0.47 +2.5
299,909 - Psest_0284 0.47 -1.3
299,909 - Psest_0284 0.47 -0.8
299,909 - Psest_0284 0.47 -0.5
299,909 - Psest_0284 0.47 +0.8
299,909 - Psest_0284 0.47 +1.0
299,909 - Psest_0284 0.47 +0.4
299,909 - Psest_0284 0.47 +2.7
299,909 - Psest_0284 0.47 +0.6
299,909 - Psest_0284 0.47 +3.1
299,910 + Psest_0284 0.47 -3.0
299,910 + Psest_0284 0.47 -0.3
299,910 + Psest_0284 0.47 -1.3
299,910 + Psest_0284 0.47 +0.1
299,910 + Psest_0284 0.47 -2.6
299,910 + Psest_0284 0.47 -0.5
299,910 + Psest_0284 0.47 -1.6
299,910 + Psest_0284 0.47 -1.0
299,911 - Psest_0284 0.47 -0.5
299,911 - Psest_0284 0.47 -0.0
299,911 - Psest_0284 0.47 -0.1
299,911 - Psest_0284 0.47 +2.5
299,911 - Psest_0284 0.47 +0.2
299,911 - Psest_0284 0.47 +1.1
299,911 - Psest_0284 0.47 +0.5
299,911 - Psest_0284 0.47 +0.7
299,911 - Psest_0284 0.47 -0.7
299,911 - Psest_0284 0.47 +2.3
299,911 - Psest_0284 0.47 +0.3
299,911 - Psest_0284 0.47 -0.9
299,911 - Psest_0284 0.47 +0.4
299,911 - Psest_0284 0.47 +1.4
299,911 - Psest_0284 0.47 +0.1
299,911 - Psest_0284 0.47 +0.8
299,911 - Psest_0284 0.47 +1.3
299,911 - Psest_0284 0.47 -0.1
299,911 - Psest_0284 0.47 +0.3
299,911 - Psest_0284 0.47 +0.4
299,923 + Psest_0284 0.49 +0.4
299,923 + Psest_0284 0.49 +0.2
299,924 - Psest_0284 0.49 -1.7
300,101 + Psest_0284 0.75 +0.7
300,101 + Psest_0284 0.75 -2.3
300,101 + Psest_0284 0.75 -1.5
300,101 + Psest_0284 0.75 -1.9
300,101 + Psest_0284 0.75 -1.9
300,101 + Psest_0284 0.75 -0.7
300,102 - Psest_0284 0.75 +1.5
300,102 - Psest_0284 0.75 +0.9
300,102 - Psest_0284 0.75 +0.5
300,102 - Psest_0284 0.75 -0.2
300,102 - Psest_0284 0.75 +2.0
300,102 - Psest_0284 0.75 +2.1
300,252 + -0.6
300,252 + +0.1
300,253 - +0.5
300,253 - +0.6
300,253 - -0.8
300,253 - -1.0
300,274 + -0.5
300,274 + -0.6
300,274 + -2.3
300,274 + -2.8
300,275 - +0.3
300,275 - +2.3
300,275 - +0.2
300,275 - +0.7
300,275 - -1.6
300,275 - +1.1
300,275 - +1.0
300,275 - -1.2
300,275 - -0.3
300,275 - -0.9
300,275 - +2.0
300,275 - -1.0
300,275 - -0.9
300,311 + -2.2
300,311 + -1.8
300,311 + -2.3
300,312 - -1.1
300,312 - -2.8
300,312 - -0.1
300,312 - +0.5
300,312 - +0.2
300,312 - -0.6
300,312 - -1.9
300,312 - -1.8
300,312 - +2.1
300,312 - -0.3
300,312 - +2.7
300,312 - +2.7
300,326 - -1.0
300,326 - -0.6
300,346 - -3.5
300,493 + Psest_0285 0.15 +0.1
300,493 + Psest_0285 0.15 +1.6
300,493 + Psest_0285 0.15 -1.1
300,494 - Psest_0285 0.15 +1.7
300,494 - Psest_0285 0.15 -2.5
300,494 - Psest_0285 0.15 +0.6
300,494 - Psest_0285 0.15 +0.6
300,494 - Psest_0285 0.15 +0.5
300,494 - Psest_0285 0.15 +0.7

Or see this region's nucleotide sequence