Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0260 and Psest_0261 are separated by 112 nucleotides Psest_0261 and Psest_0262 are separated by 83 nucleotides
Psest_0260: Psest_0260 - Cell division protein, at 274,524 to 275,543
_0260
Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510
_0261
Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164
_0262
Position (kb) 275
276
277 Strain fitness (log2 ratio) -2
-1
0
1
2 at 275.283 kb on + strand, within Psest_0260 at 275.284 kb on - strand, within Psest_0260 at 275.304 kb on + strand, within Psest_0260 at 275.305 kb on - strand, within Psest_0260 at 275.491 kb on + strand at 275.491 kb on + strand at 275.492 kb on - strand at 275.622 kb on + strand at 275.622 kb on + strand at 275.622 kb on + strand at 276.524 kb on - strand at 276.642 kb on + strand at 276.747 kb on - strand at 276.841 kb on + strand at 276.923 kb on + strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 277.176 kb on + strand, within Psest_0262 at 277.234 kb on - strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 275,283 + Psest_0260 0.74 -0.5 275,284 - Psest_0260 0.75 -1.6 275,304 + Psest_0260 0.76 -2.6 275,305 - Psest_0260 0.77 +0.5 275,491 + -2.7 275,491 + +0.3 275,492 - -1.7 275,622 + -0.4 275,622 + +1.9 275,622 + +0.7 276,524 - -0.4 276,642 + -0.5 276,747 - +0.4 276,841 + +1.4 276,923 + Psest_0262 0.13 +0.2 276,924 - Psest_0262 0.13 -1.3 276,924 - Psest_0262 0.13 +0.3 276,924 - Psest_0262 0.13 -0.1 276,924 - Psest_0262 0.13 -2.4 276,924 - Psest_0262 0.13 +0.1 276,924 - Psest_0262 0.13 +0.2 277,176 + Psest_0262 0.23 -0.9 277,234 - Psest_0262 0.25 +1.1 277,386 + Psest_0262 0.31 +0.3 277,386 + Psest_0262 0.31 -1.6 277,386 + Psest_0262 0.31 -1.1 277,387 - Psest_0262 0.31 +1.6 277,387 - Psest_0262 0.31 -1.1 277,387 - Psest_0262 0.31 -1.5 277,387 - Psest_0262 0.31 -1.2 277,387 - Psest_0262 0.31 -0.8 277,387 - Psest_0262 0.31 -2.5 277,387 - Psest_0262 0.31 -0.4
Or see this region's nucleotide sequence