Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0790

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0788 and Psest_0789 are separated by 216 nucleotidesPsest_0789 and Psest_0790 are separated by 68 nucleotidesPsest_0790 and Psest_0791 are separated by 166 nucleotides Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164 _0788 Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734 _0789 Psest_0790: Psest_0790 - Uncharacterized protein conserved in bacteria, at 862,803 to 863,243 _0790 Psest_0791: Psest_0791 - Acyl-CoA dehydrogenases, at 863,410 to 864,660 _0791 Position (kb) 862 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 861.884 kb on + strand, within Psest_0788at 861.884 kb on + strand, within Psest_0788at 861.884 kb on + strand, within Psest_0788at 861.884 kb on + strand, within Psest_0788at 861.885 kb on - strand, within Psest_0788at 861.885 kb on - strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.886 kb on + strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 861.887 kb on - strand, within Psest_0788at 862.142 kb on + strandat 862.153 kb on - strandat 862.198 kb on + strandat 862.198 kb on + strandat 862.198 kb on + strandat 862.198 kb on + strandat 862.198 kb on + strandat 862.198 kb on + strandat 862.198 kb on + strandat 862.198 kb on + strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.199 kb on - strandat 862.220 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.227 kb on + strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.228 kb on - strandat 862.230 kb on - strandat 862.230 kb on - strandat 862.247 kb on - strandat 862.248 kb on + strandat 862.249 kb on - strandat 862.337 kb on - strandat 862.431 kb on + strand, within Psest_0789at 862.432 kb on - strand, within Psest_0789at 862.432 kb on - strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.618 kb on + strand, within Psest_0789at 862.619 kb on - strand, within Psest_0789at 862.625 kb on + strand, within Psest_0789at 862.626 kb on - strand, within Psest_0789at 862.810 kb on - strandat 862.989 kb on + strand, within Psest_0790at 863.083 kb on + strand, within Psest_0790at 863.083 kb on + strand, within Psest_0790at 863.084 kb on - strand, within Psest_0790at 863.229 kb on + strandat 863.229 kb on + strandat 863.229 kb on + strandat 863.229 kb on + strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.370 kb on + strandat 863.371 kb on - strandat 863.422 kb on + strandat 863.527 kb on + strandat 863.887 kb on + strand, within Psest_0791at 863.888 kb on - strand, within Psest_0791

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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861,884 + Psest_0788 0.33 +0.7
861,884 + Psest_0788 0.33 -2.0
861,884 + Psest_0788 0.33 +0.4
861,884 + Psest_0788 0.33 +1.2
861,885 - Psest_0788 0.33 +1.7
861,885 - Psest_0788 0.33 -3.2
861,886 + Psest_0788 0.34 -1.2
861,886 + Psest_0788 0.34 -0.7
861,886 + Psest_0788 0.34 -2.3
861,886 + Psest_0788 0.34 -0.5
861,886 + Psest_0788 0.34 -1.5
861,886 + Psest_0788 0.34 -0.5
861,886 + Psest_0788 0.34 +2.4
861,886 + Psest_0788 0.34 -0.2
861,886 + Psest_0788 0.34 -2.7
861,886 + Psest_0788 0.34 +0.9
861,887 - Psest_0788 0.34 -0.7
861,887 - Psest_0788 0.34 -2.4
861,887 - Psest_0788 0.34 +0.1
861,887 - Psest_0788 0.34 -1.7
861,887 - Psest_0788 0.34 -0.9
861,887 - Psest_0788 0.34 +1.4
861,887 - Psest_0788 0.34 +1.0
861,887 - Psest_0788 0.34 -0.2
861,887 - Psest_0788 0.34 -1.9
861,887 - Psest_0788 0.34 -0.5
861,887 - Psest_0788 0.34 +1.4
861,887 - Psest_0788 0.34 +0.9
861,887 - Psest_0788 0.34 +2.7
862,142 + +0.3
862,153 - -1.4
862,198 + +1.9
862,198 + +0.5
862,198 + +2.9
862,198 + +0.4
862,198 + -0.3
862,198 + -1.1
862,198 + -2.3
862,198 + -0.3
862,199 - +0.2
862,199 - +0.4
862,199 - -1.1
862,199 - -0.8
862,199 - -1.1
862,199 - -0.9
862,199 - -0.6
862,199 - -0.6
862,199 - -0.7
862,199 - -2.6
862,199 - +0.8
862,220 + +3.6
862,227 + +1.7
862,227 + -0.4
862,227 + +0.6
862,227 + -0.4
862,227 + -1.5
862,227 + -1.6
862,227 + +0.2
862,227 + -0.2
862,227 + -0.0
862,227 + +1.8
862,227 + +2.0
862,227 + -0.9
862,227 + +2.7
862,227 + +2.6
862,227 + -1.4
862,227 + +1.3
862,227 + +0.2
862,227 + +0.8
862,228 - -0.4
862,228 - +0.6
862,228 - -1.3
862,228 - -0.2
862,228 - -0.7
862,228 - +1.0
862,228 - +1.0
862,228 - -0.5
862,228 - -1.4
862,228 - -1.0
862,230 - -2.0
862,230 - +0.5
862,247 - -0.3
862,248 + -1.1
862,249 - +1.7
862,337 - -0.3
862,431 + Psest_0789 0.14 -0.7
862,432 - Psest_0789 0.14 -0.9
862,432 - Psest_0789 0.14 +0.2
862,618 + Psest_0789 0.67 -2.3
862,618 + Psest_0789 0.67 -2.3
862,618 + Psest_0789 0.67 -1.5
862,618 + Psest_0789 0.67 -1.4
862,618 + Psest_0789 0.67 +0.2
862,618 + Psest_0789 0.67 +0.1
862,619 - Psest_0789 0.67 -2.2
862,625 + Psest_0789 0.69 -0.2
862,626 - Psest_0789 0.69 -2.4
862,810 - +0.3
862,989 + Psest_0790 0.42 -1.7
863,083 + Psest_0790 0.63 -3.3
863,083 + Psest_0790 0.63 -1.0
863,084 - Psest_0790 0.64 -0.4
863,229 + -3.0
863,229 + +1.4
863,229 + -2.4
863,229 + -0.1
863,230 - -1.3
863,230 - +1.7
863,370 + -2.0
863,371 - -1.8
863,422 + -2.3
863,527 + -1.4
863,887 + Psest_0791 0.38 +0.7
863,888 - Psest_0791 0.38 -1.1

Or see this region's nucleotide sequence