Experiment: L-tyrosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0671 and Psest_0672 are separated by 154 nucleotides Psest_0672 and Psest_0673 are separated by 204 nucleotides
Psest_0671: Psest_0671 - NAD-dependent aldehyde dehydrogenases, at 731,821 to 733,341
_0671
Psest_0672: Psest_0672 - Alcohol dehydrogenase, class IV, at 733,496 to 734,644
_0672
Psest_0673: Psest_0673 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 734,849 to 736,198
_0673
Position (kb) 733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 732.530 kb on + strand, within Psest_0671 at 732.530 kb on + strand, within Psest_0671 at 732.530 kb on + strand, within Psest_0671 at 732.531 kb on - strand, within Psest_0671 at 732.531 kb on - strand, within Psest_0671 at 732.754 kb on - strand, within Psest_0671 at 732.788 kb on - strand, within Psest_0671 at 732.897 kb on - strand, within Psest_0671 at 732.897 kb on - strand, within Psest_0671 at 732.962 kb on + strand, within Psest_0671 at 732.963 kb on - strand, within Psest_0671 at 733.238 kb on + strand at 733.238 kb on + strand at 733.239 kb on - strand at 733.239 kb on - strand at 733.239 kb on - strand at 733.334 kb on + strand at 733.334 kb on + strand at 733.334 kb on + strand at 733.334 kb on + strand at 733.334 kb on + strand at 733.334 kb on + strand at 733.335 kb on - strand at 733.405 kb on - strand at 733.776 kb on + strand, within Psest_0672 at 733.776 kb on + strand, within Psest_0672 at 733.776 kb on + strand, within Psest_0672 at 733.776 kb on + strand, within Psest_0672 at 733.776 kb on + strand, within Psest_0672 at 733.777 kb on - strand, within Psest_0672 at 733.777 kb on - strand, within Psest_0672 at 733.777 kb on - strand, within Psest_0672 at 733.777 kb on - strand, within Psest_0672 at 733.777 kb on - strand, within Psest_0672 at 733.777 kb on - strand, within Psest_0672 at 733.777 kb on - strand, within Psest_0672 at 733.830 kb on + strand, within Psest_0672 at 733.830 kb on + strand, within Psest_0672 at 733.830 kb on + strand, within Psest_0672 at 733.830 kb on + strand, within Psest_0672 at 733.830 kb on + strand, within Psest_0672 at 733.831 kb on - strand, within Psest_0672 at 733.831 kb on - strand, within Psest_0672 at 733.831 kb on - strand, within Psest_0672 at 733.866 kb on + strand, within Psest_0672 at 733.867 kb on - strand, within Psest_0672 at 733.867 kb on - strand, within Psest_0672 at 733.914 kb on + strand, within Psest_0672 at 733.914 kb on + strand, within Psest_0672 at 733.915 kb on - strand, within Psest_0672 at 733.915 kb on - strand, within Psest_0672 at 734.040 kb on + strand, within Psest_0672 at 734.040 kb on + strand, within Psest_0672 at 734.040 kb on + strand, within Psest_0672 at 734.040 kb on + strand, within Psest_0672 at 734.040 kb on + strand, within Psest_0672 at 734.040 kb on + strand, within Psest_0672 at 734.040 kb on + strand, within Psest_0672 at 734.041 kb on - strand, within Psest_0672 at 734.041 kb on - strand, within Psest_0672 at 734.041 kb on - strand, within Psest_0672 at 734.041 kb on - strand, within Psest_0672 at 734.171 kb on + strand, within Psest_0672 at 734.289 kb on + strand, within Psest_0672 at 734.289 kb on + strand, within Psest_0672 at 734.300 kb on - strand, within Psest_0672 at 734.562 kb on + strand at 734.562 kb on + strand at 734.562 kb on + strand at 734.563 kb on - strand at 734.563 kb on - strand at 734.854 kb on + strand at 734.861 kb on - strand at 735.086 kb on + strand, within Psest_0673 at 735.086 kb on + strand, within Psest_0673 at 735.086 kb on + strand, within Psest_0673 at 735.087 kb on - strand, within Psest_0673 at 735.111 kb on - strand, within Psest_0673 at 735.332 kb on + strand, within Psest_0673
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (C) remove 732,530 + Psest_0671 0.47 +1.0 732,530 + Psest_0671 0.47 -0.2 732,530 + Psest_0671 0.47 -0.9 732,531 - Psest_0671 0.47 -1.6 732,531 - Psest_0671 0.47 -1.0 732,754 - Psest_0671 0.61 +1.8 732,788 - Psest_0671 0.64 +1.1 732,897 - Psest_0671 0.71 +1.6 732,897 - Psest_0671 0.71 +0.8 732,962 + Psest_0671 0.75 -1.2 732,963 - Psest_0671 0.75 -0.1 733,238 + -0.1 733,238 + +1.1 733,239 - -1.4 733,239 - -1.2 733,239 - +0.7 733,334 + -0.1 733,334 + -1.5 733,334 + -0.9 733,334 + +1.1 733,334 + +2.7 733,334 + -3.0 733,335 - +1.0 733,405 - +3.2 733,776 + Psest_0672 0.24 -0.0 733,776 + Psest_0672 0.24 -1.6 733,776 + Psest_0672 0.24 -1.4 733,776 + Psest_0672 0.24 -1.6 733,776 + Psest_0672 0.24 +0.3 733,777 - Psest_0672 0.24 -1.3 733,777 - Psest_0672 0.24 +1.2 733,777 - Psest_0672 0.24 -0.2 733,777 - Psest_0672 0.24 -1.6 733,777 - Psest_0672 0.24 -1.8 733,777 - Psest_0672 0.24 +0.6 733,777 - Psest_0672 0.24 +0.8 733,830 + Psest_0672 0.29 -1.0 733,830 + Psest_0672 0.29 -0.9 733,830 + Psest_0672 0.29 +0.3 733,830 + Psest_0672 0.29 -0.1 733,830 + Psest_0672 0.29 -0.3 733,831 - Psest_0672 0.29 -2.0 733,831 - Psest_0672 0.29 -2.3 733,831 - Psest_0672 0.29 +1.1 733,866 + Psest_0672 0.32 +0.9 733,867 - Psest_0672 0.32 -0.6 733,867 - Psest_0672 0.32 -0.2 733,914 + Psest_0672 0.36 -1.2 733,914 + Psest_0672 0.36 -1.2 733,915 - Psest_0672 0.36 +0.0 733,915 - Psest_0672 0.36 -1.0 734,040 + Psest_0672 0.47 +1.0 734,040 + Psest_0672 0.47 -0.5 734,040 + Psest_0672 0.47 -1.8 734,040 + Psest_0672 0.47 -0.3 734,040 + Psest_0672 0.47 -1.7 734,040 + Psest_0672 0.47 -2.0 734,040 + Psest_0672 0.47 -0.7 734,041 - Psest_0672 0.47 +0.1 734,041 - Psest_0672 0.47 -1.2 734,041 - Psest_0672 0.47 -1.4 734,041 - Psest_0672 0.47 +0.3 734,171 + Psest_0672 0.59 +2.7 734,289 + Psest_0672 0.69 +3.8 734,289 + Psest_0672 0.69 +0.5 734,300 - Psest_0672 0.70 +0.8 734,562 + -1.1 734,562 + -0.4 734,562 + -1.1 734,563 - -2.6 734,563 - +1.2 734,854 + -1.6 734,861 - +0.7 735,086 + Psest_0673 0.18 +1.6 735,086 + Psest_0673 0.18 +2.7 735,086 + Psest_0673 0.18 +1.3 735,087 - Psest_0673 0.18 +1.1 735,111 - Psest_0673 0.19 +2.6 735,332 + Psest_0673 0.36 +1.7
Or see this region's nucleotide sequence